{ "type": "genome", "identifier": "GCA_947429905.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947429905.1", "bioproject": "PRJEB57762", "biosample": "SAMEA112164988", "wgs_master": "CANERJ000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "SRR12506344_bin.41_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/29", "asm_name": "SRR12506344_bin.41_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/429/905/GCA_947429905.1_SRR12506344_bin.41_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-29", "dateModified": "2022-11-29", "datePublished": "2022-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.969 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3377729", "Number of Sequences": "221", "Longest Sequences (bp)": "92479", "N50 (bp)": "28573", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.6", "Number of CDSs": "2904", "Average Protein Length": "329.4", "Coding Ratio (%)": "85.0", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.362, "matched_fragments": 89, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 76.236, "matched_fragments": 99, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=DSM 100556", "accession": "GCA_004345255.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.2271, "matched_fragments": 61, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 76.0933, "matched_fragments": 96, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=KNHs209", "accession": "GCA_000732725.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.0868, "matched_fragments": 61, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 76.0623, "matched_fragments": 63, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 75.9311, "matched_fragments": 91, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 75.8061, "matched_fragments": 51, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_000158075.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 75.7758, "matched_fragments": 50, "total_fragments": 1018, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009774655.1", "gtdb_species": "s__UBA3282 sp009774655", "ani": 97.8049, "matched_fragments": 695, "total_fragments": 1018, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3282", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_910578115.1", "gtdb_species": "s__UBA3282 sp910578115", "ani": 87.2961, 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"id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }