{
    "type": "genome",
    "identifier": "GCA_947445045.1",
    "organism": "Gallionellaceae bacterium",
    "title": "Gallionellaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947445045.1",
        "bioproject": "PRJNA429145",
        "biosample": "SAMEA112172426",
        "wgs_master": "CANFCA000000000.1",
        "refseq_category": "na",
        "taxid": "2052162",
        "species_taxid": "2052162",
        "organism_name": "Gallionellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Jr-11dec17-61",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/02",
        "asm_name": "Jr-11dec17-61",
        "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/445/045/GCA_947445045.1_Jr-11dec17-61",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-02",
    "dateModified": "2022-12-02",
    "datePublished": "2022-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gallionellaceae bacterium"
        ],
        "sample_taxid": [
            "2052162"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.443 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 47.54,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1537574",
        "Number of Sequences": "285",
        "Longest Sequences (bp)": "25532",
        "N50 (bp)": "5651",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "1273",
        "Average Protein Length": "277.3",
        "Coding Ratio (%)": "68.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ferrigenium kumadai",
                "strain": "strain=An22",
                "accession": "GCA_018324385.1",
                "taxid": 1682490,
                "species_taxid": 1682490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8727,
                "matched_fragments": 50,
                "total_fragments": 399,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 47.54,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013141315.1",
                "gtdb_species": "s__Gallionella sp013141315",
                "ani": 88.7056,
                "matched_fragments": 257,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003153155.1",
                "gtdb_species": "s__Gallionella sp003153155",
                "ani": 77.3078,
                "matched_fragments": 103,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013043965.1",
                "gtdb_species": "s__Gallionella sp013043965",
                "ani": 77.2553,
                "matched_fragments": 74,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002403995.1",
                "gtdb_species": "s__Gallionella sp002403995",
                "ani": 77.2,
                "matched_fragments": 67,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016218415.1",
                "gtdb_species": "s__Gallionella sp016218415",
                "ani": 76.9552,
                "matched_fragments": 64,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004298605.1",
                "gtdb_species": "s__Gallionella sp004298605",
                "ani": 76.9132,
                "matched_fragments": 53,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013044075.1",
                "gtdb_species": "s__Gallionella sp013044075",
                "ani": 76.8329,
                "matched_fragments": 71,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903858965.1",
                "gtdb_species": "s__Gallionella sp903858965",
                "ani": 76.729,
                "matched_fragments": 68,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001801175.1",
                "gtdb_species": "s__Gallionella sp001801175",
                "ani": 76.7031,
                "matched_fragments": 63,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903934275.1",
                "gtdb_species": "s__Gallionella sp903934275",
                "ani": 76.3677,
                "matched_fragments": 51,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001801025.1",
                "gtdb_species": "s__Gallionella sp001801025",
                "ani": 75.9905,
                "matched_fragments": 51,
                "total_fragments": 399,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.5,
        "cell_length": 0.19,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 22.0,
        "optimum_ph": 7.75,
        "genome_size": 2953388.75,
        "gc_content": 56.116,
        "coding_genes": 3030.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__Gallionella",
        "s__Gallionella sp947445045"
    ],
    "_genome_taxon": [
        "Gallionellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__Gallionella",
        "s__Gallionella sp947445045",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Gallionellaceae",
        "Gallionella",
        "Gallionella",
        "sp947445045"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}