{ "type": "genome", "identifier": "GCA_947448085.1", "organism": "Sphingomonadales bacterium", "title": "Sphingomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947448085.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112172531", "wgs_master": "CANFMS000000000.1", "refseq_category": "na", "taxid": "1978525", "species_taxid": "1978525", "organism_name": "Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "Jr-11may16-31", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-11may16-31", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/448/085/GCA_947448085.1_Jr-11may16-31", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonadales bacterium" ], "sample_taxid": [ "1978525" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.705 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2493082", "Number of Sequences": "289", "Longest Sequences (bp)": "41502", "N50 (bp)": "10503", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.7", "Number of CDSs": "2158", "Average Protein Length": "306.1", "Coding Ratio (%)": "79.5", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 77.5079, "matched_fragments": 153, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter portus", "strain": "strain=FM6", "accession": "GCA_003171655.1", "taxid": 2676234, "species_taxid": 2676234, "relation_to_type": "type", "validated": true, "ani": 77.3867, "matched_fragments": 142, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium limneticum", "strain": "strain=DSM 25076", "accession": "GCA_008710155.1", "taxid": 1007511, "species_taxid": 1007511, "relation_to_type": "type", "validated": true, "ani": 77.3792, "matched_fragments": 154, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stakelama sediminis", "strain": "strain=DSM 27203", "accession": "GCA_014199335.1", "taxid": 463200, "species_taxid": 463200, "relation_to_type": "type", "validated": true, "ani": 77.3401, "matched_fragments": 118, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas laterariae", "strain": "strain=LNB2", "accession": "GCA_900188165.1", "taxid": 861865, "species_taxid": 861865, "relation_to_type": "type", "validated": true, "ani": 77.3328, "matched_fragments": 184, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.2608, "matched_fragments": 164, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parapaucimobilis", "strain": "strain=NBRC 15100", "accession": "GCA_000787715.1", "taxid": 28213, "species_taxid": 28213, "relation_to_type": "type", "validated": true, "ani": 77.2249, "matched_fragments": 153, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.1893, "matched_fragments": 185, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.1742, "matched_fragments": 165, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium wenxiniae", "strain": "strain=JZ-1", "accession": "GCA_014205735.1", "taxid": 595605, "species_taxid": 595605, "relation_to_type": "type", "validated": true, "ani": 77.1412, "matched_fragments": 137, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanguinis", "strain": "strain=NBRC 13937", "accession": "GCA_001591005.1", "taxid": 33051, "species_taxid": 33051, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0727, "matched_fragments": 137, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": "GCA_000013985.1", "taxid": 117207, 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