{ "type": "genome", "identifier": "GCA_947448405.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947448405.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172567", "wgs_master": "CANFMX000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Jr-12mar18-49", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-12mar18-49", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/448/405/GCA_947448405.1_Jr-12mar18-49", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.759 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2717652", "Number of Sequences": "224", "Longest Sequences (bp)": "71448", "N50 (bp)": "17755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.5", "Number of CDSs": "2166", "Average Protein Length": "334.9", "Coding Ratio (%)": "80.1", "Number of rRNAs": "1", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 80.86, "matched_fragments": 495, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 80.4832, "matched_fragments": 436, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 80.1974, "matched_fragments": 455, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 79.8274, "matched_fragments": 447, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 79.6311, "matched_fragments": 401, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.6075, "matched_fragments": 432, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.4803, "matched_fragments": 395, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 79.4527, "matched_fragments": 386, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 79.3701, "matched_fragments": 369, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 79.2789, "matched_fragments": 391, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 79.078, "matched_fragments": 359, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 79.0556, "matched_fragments": 357, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 78.9816, "matched_fragments": 364, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 78.8856, "matched_fragments": 282, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 78.7946, "matched_fragments": 324, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium restrictum", "strain": "strain=LB1R34", "accession": "GCA_007097245.1", "taxid": 2594428, "species_taxid": 2594428, "relation_to_type": "type", "validated": true, "ani": 78.6852, "matched_fragments": 389, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 78.4609, "matched_fragments": 317, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.4066, "matched_fragments": 340, "total_fragments": 790, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903837025.1", "gtdb_species": "s__Flavobacterium sp903837025", "ani": 87.0724, "matched_fragments": 445, "total_fragments": 790, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903861155.1", "gtdb_species": "s__Flavobacterium sp903861155", "ani": 83.2372, "matched_fragments": 497, "total_fragments": 790, "gtdb_taxonomy": 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"Flavobacteriaceae", "Flavobacterium", "Flavobacterium", "sp947373225" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }