{ "type": "genome", "identifier": "GCA_947448675.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947448675.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172566", "wgs_master": "CANFOR000000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Jr-12mar18-47", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-12mar18-47", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/448/675/GCA_947448675.1_Jr-12mar18-47", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.758 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2704859", "Number of Sequences": "286", "Longest Sequences (bp)": "48936", "N50 (bp)": "11574", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "2321", "Average Protein Length": "314.1", "Coding Ratio (%)": "80.9", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 78.2628, "matched_fragments": 273, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 78.1318, "matched_fragments": 254, 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"below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 77.9577, "matched_fragments": 230, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.8071, "matched_fragments": 245, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.8049, "matched_fragments": 248, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 77.6949, "matched_fragments": 241, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 77.6919, "matched_fragments": 251, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", "strain": "strain=N35", "accession": "GCA_000204195.2", "taxid": 758826, "species_taxid": 758826, "relation_to_type": "type", "validated": true, "ani": 77.6797, "matched_fragments": 274, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 77.6735, "matched_fragments": 274, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 77.6085, "matched_fragments": 268, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 77.5497, "matched_fragments": 269, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 77.544, "matched_fragments": 276, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 77.5439, "matched_fragments": 231, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 77.5084, "matched_fragments": 246, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax beijingensis", "strain": "strain=502", "accession": "GCA_003951285.1", "taxid": 2496117, "species_taxid": 2496117, "relation_to_type": "type", "validated": true, "ani": 77.5071, "matched_fragments": 284, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax paradoxus", "strain": "strain=NBRC 15149", "accession": "GCA_001591365.1", "taxid": 34073, "species_taxid": 34073, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4947, "matched_fragments": 297, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 77.4935, "matched_fragments": 275, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 77.4798, "matched_fragments": 200, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 77.44, "matched_fragments": 285, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, "species_taxid": 747304, "relation_to_type": "type", "validated": true, "ani": 77.4009, "matched_fragments": 264, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter monticola", "strain": "strain=KACC 19175", "accession": "GCA_016722785.1", "taxid": 1926872, "species_taxid": 1926872, "relation_to_type": "type", "validated": true, "ani": 76.9863, "matched_fragments": 231, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter henchirensis", "strain": "strain=DSM 14656", "accession": "GCA_004682015.1", "taxid": 204072, "species_taxid": 204072, "relation_to_type": "type", "validated": true, "ani": 76.9186, "matched_fragments": 210, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inhella gelatinilytica", "strain": "strain=4Y10", "accession": "GCA_016093295.1", "taxid": 2795030, "species_taxid": 2795030, "relation_to_type": "type", "validated": true, "ani": 76.8325, "matched_fragments": 90, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicella baoligensis", "strain": "strain=B18-50", "accession": "GCA_013432195.1", "taxid": 2707016, "species_taxid": 2707016, "relation_to_type": "type", "validated": true, "ani": 76.8074, "matched_fragments": 164, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucibacter toxinivorans", "strain": "strain=DSM 16998", "accession": "GCA_004362525.1", "taxid": 270368, "species_taxid": 270368, "relation_to_type": "type", "validated": true, "ani": 76.5924, "matched_fragments": 178, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 76.4399, "matched_fragments": 165, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002454975.1", "gtdb_species": "s__Hylemonella sp002454975", "ani": 78.4441, "matched_fragments": 247, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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