{ "type": "genome", "identifier": "GCA_947449565.1", "organism": "Alcaligenaceae bacterium", "title": "Alcaligenaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947449565.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172945", "wgs_master": "CANFSI000000000.1", "refseq_category": "na", "taxid": "2021368", "species_taxid": "2021368", "organism_name": "Alcaligenaceae bacterium", "infraspecific_name": "", "isolate": "Jr-23apr18-32", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-23apr18-32", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/449/565/GCA_947449565.1_Jr-23apr18-32", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcaligenaceae bacterium" ], "sample_taxid": [ "2021368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.03, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3297531", "Number of Sequences": "273", "Longest Sequences (bp)": "67923", "N50 (bp)": "15996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.8", "Number of CDSs": "2831", "Average Protein Length": "324.1", "Coding Ratio (%)": "83.5", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zwartia hollandica", "strain": "strain=LF4-65", "accession": "GCA_019923725.1", "taxid": 324606, "species_taxid": 324606, "relation_to_type": "type", "validated": true, "ani": 77.4614, "matched_fragments": 139, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sheuella amnicola", "strain": "strain=NBD-18", "accession": "GCA_010499255.1", "taxid": 2707330, "species_taxid": 2707330, "relation_to_type": "type", "validated": true, "ani": 77.2325, "matched_fragments": 102, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pulmonis", "strain": "strain=LMG 26696", "accession": "GCA_902859765.1", "taxid": 1389932, "species_taxid": 1389932, "relation_to_type": "type", "validated": true, "ani": 76.3671, "matched_fragments": 50, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jezberella montanilacus", "strain": "strain=MWH-P2sevCIIIb", "accession": "GCA_003003055.1", "taxid": 323426, "species_taxid": 323426, "relation_to_type": "type", "validated": true, "ani": 76.156, "matched_fragments": 84, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0476, "matched_fragments": 59, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=DSM 23806", "accession": "GCA_002812705.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9998, "matched_fragments": 58, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aestuarii", "strain": "strain=KS-M25", "accession": "GCA_009866805.1", "taxid": 2511204, "species_taxid": 2511204, "relation_to_type": "type", "validated": true, "ani": 75.8853, "matched_fragments": 55, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 75.8728, "matched_fragments": 56, "total_fragments": 973, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", 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