{ "type": "genome", "identifier": "GCA_947449785.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947449785.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172705", "wgs_master": "CANFSV000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "Jr-16oct17-161", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-16oct17-161", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/449/785/GCA_947449785.1_Jr-16oct17-161", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.539 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 47.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1869898", "Number of Sequences": "113", "Longest Sequences (bp)": "63753", "N50 (bp)": "24211", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.1", "Number of CDSs": "1706", "Average Protein Length": "318.6", "Coding Ratio (%)": "87.2", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 80.2641, "matched_fragments": 311, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 78.7965, "matched_fragments": 191, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 78.7354, "matched_fragments": 187, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter wuianus", "strain": "strain=QLW-P1FAT50C-4", "accession": "GCA_001659725.1", "taxid": 1743168, "species_taxid": 1743168, "relation_to_type": "type", "validated": true, "ani": 78.6727, "matched_fragments": 210, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 78.5433, "matched_fragments": 210, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 78.5188, "matched_fragments": 198, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 78.4625, "matched_fragments": 183, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 78.4466, "matched_fragments": 192, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 78.3055, "matched_fragments": 188, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 78.1888, "matched_fragments": 194, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 78.1706, "matched_fragments": 179, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 78.1452, "matched_fragments": 185, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter paludilacus", "strain": "strain=MWH-Mekk-C3", "accession": "GCA_018687595.1", "taxid": 1855895, "species_taxid": 1855895, "relation_to_type": "type", "validated": true, "ani": 77.8257, "matched_fragments": 140, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 47.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018881755.1", "gtdb_species": "s__Polynucleobacter sp903953215", "ani": 80.283, "matched_fragments": 310, "total_fragments": 569, "gtdb_taxonomy": 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