{ "type": "genome", "identifier": "GCA_947449995.1", "organism": "Comamonadaceae bacterium", "title": "Comamonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947449995.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172918", "wgs_master": "CANFTT000000000.1", "refseq_category": "na", "taxid": "1871071", "species_taxid": "1871071", "organism_name": "Comamonadaceae bacterium", "infraspecific_name": "", "isolate": "Jr-20nov17-71", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-20nov17-71", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/449/995/GCA_947449995.1_Jr-20nov17-71", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonadaceae bacterium" ], "sample_taxid": [ "1871071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.648 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.18, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2318617", "Number of Sequences": "140", "Longest Sequences (bp)": "85673", "N50 (bp)": "21565", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "2212", "Average Protein Length": "303.6", "Coding Ratio (%)": "86.9", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 78.3613, "matched_fragments": 267, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 78.0258, "matched_fragments": 245, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 77.8095, "matched_fragments": 263, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.7302, "matched_fragments": 231, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 77.5021, "matched_fragments": 186, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 77.4578, "matched_fragments": 220, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax soli", "strain": "strain=DSM 25157", "accession": "GCA_900107605.1", "taxid": 592050, "species_taxid": 592050, "relation_to_type": "type", "validated": true, "ani": 77.3557, "matched_fragments": 179, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 77.2751, "matched_fragments": 230, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", "accession": "GCA_000013605.1", "taxid": 192843, "species_taxid": 192843, "relation_to_type": "type", "validated": true, "ani": 77.0992, "matched_fragments": 162, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 77.0915, "matched_fragments": 165, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 77.0902, "matched_fragments": 190, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.0874, "matched_fragments": 182, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 77.0649, "matched_fragments": 194, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 77.0251, "matched_fragments": 134, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.0218, "matched_fragments": 188, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 77.0172, "matched_fragments": 189, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", "strain": "strain=N35", "accession": "GCA_000204195.2", "taxid": 758826, "species_taxid": 758826, "relation_to_type": "type", "validated": true, "ani": 76.9736, "matched_fragments": 184, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 76.9644, "matched_fragments": 164, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira psychrophila", "strain": "strain=DSM 11588", "accession": "GCA_000688255.1", "taxid": 80882, "species_taxid": 80882, "relation_to_type": "type", "validated": true, "ani": 76.9288, "matched_fragments": 168, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas perlucida", "strain": "strain=HX2-24", "accession": "GCA_007655255.1", "taxid": 2590786, "species_taxid": 2590786, "relation_to_type": "type", "validated": true, "ani": 76.9102, "matched_fragments": 140, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 76.8059, "matched_fragments": 146, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax valerianellae", "strain": "strain=DSM 16619", "accession": "GCA_900102625.1", "taxid": 187868, "species_taxid": 187868, "relation_to_type": "type", "validated": true, "ani": 76.7824, "matched_fragments": 168, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas chironomi", "strain": "strain=DSM 19884", "accession": "GCA_000374625.1", "taxid": 491919, "species_taxid": 491919, "relation_to_type": "type", "validated": true, "ani": 76.7406, "matched_fragments": 110, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 76.7268, "matched_fragments": 121, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 76.5188, "matched_fragments": 128, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 76.4899, "matched_fragments": 131, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas charontis", "strain": "strain=SPSP-6", "accession": "GCA_007556685.1", "taxid": 2267262, "species_taxid": 2267262, "relation_to_type": "type", "validated": true, "ani": 76.39, "matched_fragments": 130, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.18, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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78.3613, "matched_fragments": 267, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018882835.1", "gtdb_species": "s__Limnohabitans sp018882835", "ani": 77.8309, "matched_fragments": 240, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002256145.1", "gtdb_species": "s__Limnohabitans_A sp002256145", "ani": 77.6058, 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