{ "type": "genome", "identifier": "GCA_947451095.1", "organism": "Chitinophagaceae bacterium", "title": "Chitinophagaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947451095.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172824", "wgs_master": "CANFXX000000000.1", "refseq_category": "na", "taxid": "1869212", "species_taxid": "1869212", "organism_name": "Chitinophagaceae bacterium", "infraspecific_name": "", "isolate": "Jr-16oct17-98", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-16oct17-98", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/095/GCA_947451095.1_Jr-16oct17-98", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophagaceae bacterium" ], "sample_taxid": [ "1869212" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.982 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3463298", "Number of Sequences": "113", "Longest Sequences (bp)": "254853", "N50 (bp)": "64501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "2884", "Average Protein Length": "351.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminibacterium roseum", "strain": "strain=SYL130", "accession": "GCA_009939005.1", "taxid": 1978412, "species_taxid": 1978412, "relation_to_type": "type", "validated": true, "ani": 76.9813, "matched_fragments": 75, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium ginsengisoli", "strain": "strain=DSM 22335", "accession": "GCA_900167075.1", "taxid": 413434, "species_taxid": 413434, "relation_to_type": "type", "validated": true, "ani": 76.8384, "matched_fragments": 84, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium salmoneum", "strain": "strain=NBRC 103935", "accession": "GCA_000511175.1", "taxid": 426421, "species_taxid": 426421, "relation_to_type": "type", "validated": true, "ani": 76.7709, "matched_fragments": 123, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium goheungense", "strain": "strain=DSM 28323", "accession": "GCA_004361915.1", "taxid": 1086393, "species_taxid": 1086393, "relation_to_type": "type", "validated": true, "ani": 76.7626, "matched_fragments": 119, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 75.8933, "matched_fragments": 50, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea lipotrueae", "strain": "strain=TMF_100", "accession": "GCA_019249625.1", "taxid": 2803817, "species_taxid": 2803817, "relation_to_type": "type", "validated": true, "ani": 75.8695, "matched_fragments": 84, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 75.8123, "matched_fragments": 69, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7564, "matched_fragments": 77, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnovirga soli", "strain": "strain=KCS-6", "accession": "GCA_013106755.1", "taxid": 2656915, "species_taxid": 2656915, "relation_to_type": "type", "validated": true, "ani": 75.741, "matched_fragments": 76, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea sandarakina", "strain": "strain=DSM 23241", "accession": "GCA_003254115.1", "taxid": 1004304, "species_taxid": 1004304, "relation_to_type": "type", "validated": true, "ani": 75.6498, "matched_fragments": 86, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 75.279, "matched_fragments": 51, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903825065.1", "gtdb_species": "s__Sediminibacterium sp903825065", "ani": 81.6127, "matched_fragments": 470, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.65", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903927185.1", "gtdb_species": "s__Sediminibacterium sp903927185", "ani": 81.5488, "matched_fragments": 705, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903924075.1", "gtdb_species": "s__Sediminibacterium sp903924075", "ani": 80.1945, "matched_fragments": 488, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903821465.1", "gtdb_species": "s__Sediminibacterium sp903821465", "ani": 80.1739, "matched_fragments": 534, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903831935.1", "gtdb_species": "s__Sediminibacterium sp903831935", "ani": 78.2675, "matched_fragments": 280, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_903933995.1", "gtdb_species": "s__Sediminibacterium sp903933995", "ani": 78.156, "matched_fragments": 187, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002256435.1", "gtdb_species": "s__Sediminibacterium sp002256435", "ani": 77.9261, "matched_fragments": 298, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903958045.1", "gtdb_species": "s__Sediminibacterium sp903958045", "ani": 77.1277, "matched_fragments": 98, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001829005.1", "gtdb_species": "s__Sediminibacterium sp001829005", "ani": 76.9432, "matched_fragments": 155, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "96.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002281875.1", "gtdb_species": "s__Sediminibacterium sp002281875", "ani": 76.8386, "matched_fragments": 135, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016741945.1", "gtdb_species": "s__Sediminibacterium sp016741945", "ani": 76.5319, "matched_fragments": 97, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903841915.1", "gtdb_species": "s__CAILAF01 sp903841915", "ani": 76.431, "matched_fragments": 93, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004028765.1", "gtdb_species": "s__Sediminibacterium sp004028765", "ani": 76.3088, "matched_fragments": 89, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903899675.1", "gtdb_species": "s__Sediminibacterium sp903899675", "ani": 76.1748, "matched_fragments": 62, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017853235.1", "gtdb_species": "s__Sediminibacterium sp017853235", "ani": 75.7894, "matched_fragments": 61, "total_fragments": 1102, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.322, "cell_length": 0.364, "doubling_h": null, "growth_tmp": 30.538, "optimum_tmp": 29.829, "optimum_ph": 6.773, "genome_size": 5998721.602, "gc_content": 44.915, "coding_genes": 5429.047, "rRNA16S_genes": 3.5, "tRNA_genes": 54.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.225, "range_salinity": null, "facultative_respiration": 0.034, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.965, "mesophilic_range_tmp": 0.75, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.25, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Sediminibacterium", "s__Sediminibacterium sp947371755" ], "_genome_taxon": [ "Chitinophagaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Sediminibacterium", "s__Sediminibacterium sp947371755", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Chitinophagaceae", "Sediminibacterium", "Sediminibacterium", "sp947371755" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }