{
    "type": "genome",
    "identifier": "GCA_947451255.1",
    "organism": "Alcaligenaceae bacterium",
    "title": "Alcaligenaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947451255.1",
        "bioproject": "PRJNA429145",
        "biosample": "SAMEA112172883",
        "wgs_master": "CANFYG000000000.1",
        "refseq_category": "na",
        "taxid": "2021368",
        "species_taxid": "2021368",
        "organism_name": "Alcaligenaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Jr-20nov17-171",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/02",
        "asm_name": "Jr-20nov17-171",
        "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/255/GCA_947451255.1_Jr-20nov17-171",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-02",
    "dateModified": "2022-12-02",
    "datePublished": "2022-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenaceae bacterium"
        ],
        "sample_taxid": [
            "2021368"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.907 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 73.16,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3162104",
        "Number of Sequences": "382",
        "Longest Sequences (bp)": "41177",
        "N50 (bp)": "10173",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "2622",
        "Average Protein Length": "320.8",
        "Coding Ratio (%)": "79.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Zwartia hollandica",
                "strain": "strain=LF4-65",
                "accession": "GCA_019923725.1",
                "taxid": 324606,
                "species_taxid": 324606,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2687,
                "matched_fragments": 129,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sheuella amnicola",
                "strain": "strain=NBD-18",
                "accession": "GCA_010499255.1",
                "taxid": 2707330,
                "species_taxid": 2707330,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9905,
                "matched_fragments": 91,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jezberella montanilacus",
                "strain": "strain=MWH-P2sevCIIIb",
                "accession": "GCA_003003055.1",
                "taxid": 323426,
                "species_taxid": 323426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4695,
                "matched_fragments": 77,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter spanius",
                "strain": "strain=LMG 5911",
                "accession": "GCA_902859605.1",
                "taxid": 217203,
                "species_taxid": 217203,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.9927,
                "matched_fragments": 55,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter spanius",
                "strain": "strain=DSM 23806",
                "accession": "GCA_002812705.1",
                "taxid": 217203,
                "species_taxid": 217203,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.9673,
                "matched_fragments": 56,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 73.16,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903932425.1",
                "gtdb_species": "s__NBD-18 sp903932425",
                "ani": 98.3366,
                "matched_fragments": 725,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013205565.1",
                "gtdb_species": "s__NBD-18 sp013205565",
                "ani": 80.2644,
                "matched_fragments": 416,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002737415.1",
                "gtdb_species": "s__NBD-18 sp002737415",
                "ani": 80.1042,
                "matched_fragments": 464,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903924715.1",
                "gtdb_species": "s__NBD-18 sp903924715",
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                "matched_fragments": 339,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903958565.1",
                "gtdb_species": "s__NBD-18 sp903958565",
                "ani": 77.3829,
                "matched_fragments": 113,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903847325.1",
                "gtdb_species": "s__NBD-18 sp903847325",
                "ani": 77.1724,
                "matched_fragments": 113,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903821335.1",
                "gtdb_species": "s__NBD-18 sp903821335",
                "ani": 76.8965,
                "matched_fragments": 106,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903929925.1",
                "gtdb_species": "s__NBD-18 sp903929925",
                "ani": 76.8954,
                "matched_fragments": 102,
                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__NBD-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.238,
        "cell_length": 0.088,
        "doubling_h": 0.123,
        "growth_tmp": 31.466,
        "optimum_tmp": 31.779,
        "optimum_ph": 7.03,
        "genome_size": 4870041.732,
        "gc_content": 61.513,
        "coding_genes": 4140.427,
        "rRNA16S_genes": 3.025,
        "tRNA_genes": 51.542,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.648,
        "range_salinity": 0.666,
        "facultative_respiration": 0.101,
        "anaerobic_respiration": 0.033,
        "aerobic_respiration": 0.864,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.125,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.075,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Zwartia",
        "s__Zwartia sp903932425"
    ],
    "_genome_taxon": [
        "Alcaligenaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Zwartia",
        "s__Zwartia sp903932425",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Zwartia",
        "Zwartia",
        "sp903932425"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}