{
    "type": "genome",
    "identifier": "GCA_947451285.1",
    "organism": "Comamonadaceae bacterium",
    "title": "Comamonadaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947451285.1",
        "bioproject": "PRJNA429145",
        "biosample": "SAMEA112172885",
        "wgs_master": "CANFYL000000000.1",
        "refseq_category": "na",
        "taxid": "1871071",
        "species_taxid": "1871071",
        "organism_name": "Comamonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Jr-20nov17-173",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/02",
        "asm_name": "Jr-20nov17-173",
        "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/285/GCA_947451285.1_Jr-20nov17-173",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-02",
    "dateModified": "2022-12-02",
    "datePublished": "2022-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Comamonadaceae bacterium"
        ],
        "sample_taxid": [
            "1871071"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.555 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 43.43,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1963517",
        "Number of Sequences": "141",
        "Longest Sequences (bp)": "93696",
        "N50 (bp)": "19203",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.2",
        "Number of CDSs": "1737",
        "Average Protein Length": "323.1",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Limnohabitans curvus",
                "strain": "strain=MWH-C5",
                "accession": "GCA_003063475.1",
                "taxid": 323423,
                "species_taxid": 323423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0975,
                "matched_fragments": 288,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans planktonicus",
                "strain": "strain=II-D5",
                "accession": "GCA_001270065.2",
                "taxid": 540060,
                "species_taxid": 540060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0974,
                "matched_fragments": 182,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans radicicola",
                "strain": "strain=JUR4",
                "accession": "GCA_014837235.1",
                "taxid": 2771427,
                "species_taxid": 2771427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9388,
                "matched_fragments": 173,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter lanceolatus",
                "strain": "strain=ATCC 14669",
                "accession": "GCA_000381265.1",
                "taxid": 86182,
                "species_taxid": 86182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4561,
                "matched_fragments": 157,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3899,
                "matched_fragments": 135,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga aromaticivorans",
                "strain": "strain=D2P1",
                "accession": "GCA_013387465.1",
                "taxid": 2610898,
                "species_taxid": 2610898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3662,
                "matched_fragments": 128,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax saidenbachensis",
                "strain": "strain=DSM 22694",
                "accession": "GCA_001955715.1",
                "taxid": 1484693,
                "species_taxid": 1484693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2771,
                "matched_fragments": 128,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2074,
                "matched_fragments": 132,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax saidenbachensis",
                "strain": "strain=ED16",
                "accession": "GCA_000498435.1",
                "taxid": 1484693,
                "species_taxid": 1484693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.203,
                "matched_fragments": 128,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrigena",
                "strain": "strain=NCTC1937",
                "accession": "GCA_900461435.1",
                "taxid": 32013,
                "species_taxid": 32013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0001,
                "matched_fragments": 104,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax aquaticus",
                "strain": "strain=Gr-4",
                "accession": "GCA_006974105.1",
                "taxid": 2527691,
                "species_taxid": 2527691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9811,
                "matched_fragments": 108,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.96,
                "matched_fragments": 136,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax temperans",
                "strain": "strain=DSM 7270",
                "accession": "GCA_006716905.1",
                "taxid": 80878,
                "species_taxid": 80878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9462,
                "matched_fragments": 132,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidicella baoligensis",
                "strain": "strain=B18-50",
                "accession": "GCA_013432195.1",
                "taxid": 2707016,
                "species_taxid": 2707016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8091,
                "matched_fragments": 84,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.778,
                "matched_fragments": 102,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_001298675.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7751,
                "matched_fragments": 101,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax ferrireducens",
                "strain": "strain=DSM 15236",
                "accession": "GCA_000013605.1",
                "taxid": 192843,
                "species_taxid": 192843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7452,
                "matched_fragments": 113,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter algicola",
                "strain": "strain=CrO1",
                "accession": "GCA_016641735.1",
                "taxid": 2795217,
                "species_taxid": 2795217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2823,
                "matched_fragments": 81,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herbaspirillum camelliae",
                "strain": "strain=WT00C",
                "accession": "GCA_001929405.1",
                "taxid": 1892903,
                "species_taxid": 1892903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7451,
                "matched_fragments": 53,
                "total_fragments": 589,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 43.43,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002778315.1",
                "gtdb_species": "s__Limnohabitans sp002778315",
                "ani": 87.1465,
                "matched_fragments": 428,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903845315.1",
                "gtdb_species": "s__Limnohabitans sp903845315",
                "ani": 86.3259,
                "matched_fragments": 345,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903892175.1",
                "gtdb_species": "s__Limnohabitans sp903892175",
                "ani": 85.0298,
                "matched_fragments": 361,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.61",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903906635.1",
                "gtdb_species": "s__Limnohabitans sp903906635",
                "ani": 83.3532,
                "matched_fragments": 322,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903886485.1",
                "gtdb_species": "s__Limnohabitans sp903886485",
                "ani": 79.7614,
                "matched_fragments": 270,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003063545.1",
                "gtdb_species": "s__Limnohabitans sp003063545",
                "ani": 79.6277,
                "matched_fragments": 266,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903832625.1",
                "gtdb_species": "s__Limnohabitans sp903832625",
                "ani": 79.6245,
                "matched_fragments": 227,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.24",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903856995.1",
                "gtdb_species": "s__Limnohabitans sp903856995",
                "ani": 79.5195,
                "matched_fragments": 213,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903952885.1",
                "gtdb_species": "s__Limnohabitans sp903952885",
                "ani": 78.9356,
                "matched_fragments": 187,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903925445.1",
                "gtdb_species": "s__Limnohabitans sp903925445",
                "ani": 78.4853,
                "matched_fragments": 186,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009921465.1",
                "gtdb_species": "s__Limnohabitans sp009921465",
                "ani": 77.4486,
                "matched_fragments": 68,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001771065.1",
                "gtdb_species": "s__Rhodoferax sp001771065",
                "ani": 76.9876,
                "matched_fragments": 105,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004210805.1",
                "gtdb_species": "s__Acidovorax sp004210805",
                "ani": 76.6149,
                "matched_fragments": 97,
                "total_fragments": 589,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.247,
        "cell_length": 0.176,
        "doubling_h": 1.035,
        "growth_tmp": 28.094,
        "optimum_tmp": 29.554,
        "optimum_ph": 7.082,
        "genome_size": 4640040.381,
        "gc_content": 65.016,
        "coding_genes": 4414.595,
        "rRNA16S_genes": 3.003,
        "tRNA_genes": 56.995,
        "gram_stain": 0.0,
        "sporulation": 0.018,
        "motility": 0.797,
        "range_salinity": 0.2,
        "facultative_respiration": 0.138,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.861,
        "mesophilic_range_tmp": 0.96,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.04,
        "bacillus_cell_shape": 0.855,
        "coccus_cell_shape": 0.052,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.013,
        "vibrio_cell_shape": 0.052,
        "spiral_cell_shape": 0.026
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp947451285"
    ],
    "_genome_taxon": [
        "Comamonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp947451285",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Limnohabitans",
        "Limnohabitans",
        "sp947451285"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}