{ "type": "genome", "identifier": "GCA_947451295.1", "organism": "Comamonadaceae bacterium", "title": "Comamonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947451295.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172879", "wgs_master": "CANFYJ000000000.1", "refseq_category": "na", "taxid": "1871071", "species_taxid": "1871071", "organism_name": "Comamonadaceae bacterium", "infraspecific_name": "", "isolate": "Jr-20nov17-167", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-20nov17-167", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/295/GCA_947451295.1_Jr-20nov17-167", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonadaceae bacterium" ], "sample_taxid": [ "1871071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.579 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 32.81, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.811, "matched_fragments": 208, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 77.4027, "matched_fragments": 154, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=ED16", "accession": "GCA_000498435.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.2784, "matched_fragments": 142, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax saidenbachensis", "strain": "strain=DSM 22694", "accession": "GCA_001955715.1", "taxid": 1484693, "species_taxid": 1484693, "relation_to_type": "type", "validated": true, "ani": 77.2411, "matched_fragments": 144, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 77.0778, "matched_fragments": 157, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 76.7508, "matched_fragments": 151, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crassostreae", "strain": "strain=LPB0072", "accession": "GCA_001761385.1", "taxid": 1763535, "species_taxid": 1763535, "relation_to_type": "type", "validated": true, "ani": 76.728, "matched_fragments": 116, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 76.3193, "matched_fragments": 98, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas naphthalenivorans", "strain": "strain=CJ2", "accession": "GCA_000015505.1", "taxid": 216465, "species_taxid": 216465, "relation_to_type": "type", "validated": true, "ani": 76.2439, "matched_fragments": 104, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 76.1496, "matched_fragments": 84, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium fontiphilum", "strain": "strain=CS-6", "accession": "GCA_009909205.1", "taxid": 450365, "species_taxid": 450365, "relation_to_type": "type", "validated": true, "ani": 75.6684, "matched_fragments": 53, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 75.6021, "matched_fragments": 65, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 32.81, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003063475.1", "gtdb_species": 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"matched_fragments": 155, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.247, "cell_length": 0.176, "doubling_h": 1.035, "growth_tmp": 28.094, "optimum_tmp": 29.554, "optimum_ph": 7.082, "genome_size": 4640040.381, "gc_content": 65.016, "coding_genes": 4414.595, "rRNA16S_genes": 3.003, "tRNA_genes": 56.995, "gram_stain": 0.0, "sporulation": 0.018, "motility": 0.797, "range_salinity": 0.2, "facultative_respiration": 0.138, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.861, "mesophilic_range_tmp": 0.96, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.04, "bacillus_cell_shape": 0.855, 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