{ "type": "genome", "identifier": "GCA_947451485.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947451485.1", "bioproject": "PRJNA429145", "biosample": "SAMEA112172860", "wgs_master": "CANFYV000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Jr-20nov17-131", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-20nov17-131", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/485/GCA_947451485.1_Jr-20nov17-131", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.14, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2252623", "Number of Sequences": "48", "Longest Sequences (bp)": "157942", "N50 (bp)": "70463", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.3", "Number of CDSs": "1992", "Average Protein Length": "332.5", "Coding Ratio (%)": "88.2", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium aquatile", "strain": "strain=NBRC 15052", "accession": "GCA_006539785.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.9703, "matched_fragments": 335, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.9683, "matched_fragments": 337, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=ATCC 11947", "accession": "GCA_002217235.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.9226, "matched_fragments": 340, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.629, "matched_fragments": 204, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 77.334, "matched_fragments": 156, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.2747, "matched_fragments": 179, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 77.1529, "matched_fragments": 230, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 77.005, "matched_fragments": 155, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 76.945, "matched_fragments": 170, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 76.8482, "matched_fragments": 159, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 76.7365, "matched_fragments": 120, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 76.6952, "matched_fragments": 164, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 76.6365, "matched_fragments": 164, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 76.5979, "matched_fragments": 161, "total_fragments": 731, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 45.14, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903838055.1", "gtdb_species": "s__Flavobacterium sp903838055", "ani": 98.4607, "matched_fragments": 634, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_903913315.1", "gtdb_species": "s__Flavobacterium sp903913315", "ani": 79.0901, "matched_fragments": 320, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 79.0894, "matched_fragments": 311, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903879645.1", "gtdb_species": "s__Flavobacterium sp903879645", "ani": 79.0844, "matched_fragments": 303, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464475.1", "gtdb_species": "s__Flavobacterium sp001464475", "ani": 79.005, "matched_fragments": 361, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000757385.1", "gtdb_species": "s__Flavobacterium aquatile", "ani": 78.9685, "matched_fragments": 337, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 78.79, "matched_fragments": 320, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903888655.1", "gtdb_species": "s__Flavobacterium sp903888655", "ani": 78.7455, "matched_fragments": 247, "total_fragments": 731, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002786385.1", "gtdb_species": 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"cell_length": 0.307, "doubling_h": 1.285, "growth_tmp": 26.48, "optimum_tmp": 26.613, "optimum_ph": 7.273, "genome_size": 3914984.758, "gc_content": 35.899, "coding_genes": 3178.027, "rRNA16S_genes": 3.891, "tRNA_genes": 50.834, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.361, "range_salinity": 0.615, "facultative_respiration": 0.043, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.944, "mesophilic_range_tmp": 0.895, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.104, "bacillus_cell_shape": 0.984, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp903838055" ], "_genome_taxon": [ "Flavobacteriaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp903838055", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium", "sp903838055" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }