{ "type": "genome", "identifier": "GCA_947451855.1", "organism": "Hyphomicrobiales bacterium", "title": "Hyphomicrobiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947451855.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112172995", "wgs_master": "CANGAP000000000.1", "refseq_category": "na", "taxid": "1909294", "species_taxid": "1909294", "organism_name": "Hyphomicrobiales bacterium", "infraspecific_name": "", "isolate": "Jr-25may17-178", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-25may17-178", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/855/GCA_947451855.1_Jr-25may17-178", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Hyphomicrobiales bacterium" ], "sample_taxid": [ "1909294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.868 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.27, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3104259", "Number of Sequences": "35", "Longest Sequences (bp)": "447300", "N50 (bp)": "195541", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "2878", "Average Protein Length": "319.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_002937135.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1758, "matched_fragments": 134, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_900187365.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1469, "matched_fragments": 136, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoblastus acidophilus", "strain": "strain=DSM 137", "accession": "GCA_003258765.1", "taxid": 1074, "species_taxid": 1074, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0769, "matched_fragments": 136, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea psychrotolerans", "strain": "strain=1131", "accession": "GCA_002917105.1", "taxid": 1871628, "species_taxid": 1871628, "relation_to_type": "type", "validated": true, "ani": 76.7769, "matched_fragments": 194, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea lathyri", "strain": "strain=DSM 26656", "accession": "GCA_900108245.1", "taxid": 1036778, "species_taxid": 1036778, "relation_to_type": "type", "validated": true, "ani": 76.7673, "matched_fragments": 169, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea vaviloviae", "strain": "strain=Vaf18", "accession": "GCA_001741865.1", "taxid": 1526658, "species_taxid": 1526658, "relation_to_type": "type", "validated": true, "ani": 76.7521, "matched_fragments": 205, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 76.6546, "matched_fragments": 173, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea olei", "strain": "strain=JC234", "accession": "GCA_001703635.1", "taxid": 1480615, "species_taxid": 1480615, "relation_to_type": "type", "validated": true, "ani": 76.6507, "matched_fragments": 127, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter soli", "strain": "strain=SH9", "accession": "GCA_003004785.1", "taxid": 2109933, "species_taxid": 2109933, "relation_to_type": "type", "validated": true, "ani": 76.5817, "matched_fragments": 134, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium valentinum", "strain": "strain=LmjM3", "accession": "GCA_001440405.1", "taxid": 1518501, "species_taxid": 1518501, "relation_to_type": "type", "validated": true, "ani": 76.5683, "matched_fragments": 154, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 76.5601, "matched_fragments": 174, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 76.5596, "matched_fragments": 116, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga guangxiensis", "strain": "strain=CGMCC 1.7666", "accession": "GCA_900102135.1", "taxid": 549386, "species_taxid": 549386, "relation_to_type": "type", "validated": true, "ani": 76.5424, "matched_fragments": 131, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 76.5296, "matched_fragments": 127, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter metallidurans", "strain": "strain=CGMCC 1.12214", "accession": "GCA_014636935.1", "taxid": 340221, "species_taxid": 340221, "relation_to_type": "type", "validated": true, "ani": 76.5237, "matched_fragments": 190, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 76.5226, "matched_fragments": 146, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 76.5072, "matched_fragments": 132, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus sambhunathii", "strain": "strain=DSM 18167", "accession": "GCA_001517345.1", "taxid": 363953, "species_taxid": 363953, "relation_to_type": "type", "validated": true, "ani": 76.411, "matched_fragments": 122, 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95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 76.3071, "matched_fragments": 79, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 76.293, "matched_fragments": 110, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 76.2847, "matched_fragments": 112, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga alba", "strain": "strain=BT350", "accession": "GCA_015694465.1", "taxid": 2791025, "species_taxid": 2791025, "relation_to_type": "type", "validated": true, "ani": 76.2591, "matched_fragments": 132, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 76.1837, "matched_fragments": 97, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium marchantiae", "strain": "strain=DSM 21328", "accession": "GCA_022179405.1", "taxid": 600331, "species_taxid": 600331, "relation_to_type": "type", "validated": true, "ani": 76.176, "matched_fragments": 102, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium vallis", "strain": "strain=CCBAU 65647", "accession": "GCA_003985155.1", "taxid": 634290, "species_taxid": 634290, "relation_to_type": "type", "validated": true, "ani": 76.1392, "matched_fragments": 95, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 76.0022, "matched_fragments": 130, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 75.9959, "matched_fragments": 119, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 75.6241, "matched_fragments": 59, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.27, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903930675.1", "gtdb_species": "s__CAIYZJ01 sp903930675", "ani": 95.8839, "matched_fragments": 760, "total_fragments": 1020, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__CAIYZJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_903824185.1", "gtdb_species": "s__CAIYZJ01 sp903824185", "ani": 78.7404, "matched_fragments": 364, "total_fragments": 1020, "gtdb_taxonomy": 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