{ "type": "genome", "identifier": "GCA_947451925.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947451925.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112173026", "wgs_master": "CANGAW000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "Jr-25may17-4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-25may17-4", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/451/925/GCA_947451925.1_Jr-25may17-4", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.860 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3019293", "Number of Sequences": "108", "Longest Sequences (bp)": "153280", "N50 (bp)": "41186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.0", "Number of CDSs": "2776", "Average Protein Length": "312.9", "Coding Ratio (%)": "86.3", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 77.5772, "matched_fragments": 186, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas pratensis", "strain": "strain=Ter91", "accession": "GCA_001584185.1", "taxid": 279113, "species_taxid": 279113, "relation_to_type": "type", "validated": true, "ani": 77.5313, "matched_fragments": 193, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas fungivorans", "strain": "strain=Ter6", "accession": "GCA_001584145.1", "taxid": 158899, "species_taxid": 158899, "relation_to_type": "type", "validated": true, "ani": 77.4129, "matched_fragments": 192, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas antrihumi", "strain": "strain=DSM 104040", "accession": "GCA_018304965.1", "taxid": 1940615, "species_taxid": 1940615, "relation_to_type": "type", "validated": true, "ani": 77.3421, "matched_fragments": 192, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum autotrophicum", "strain": "strain=IAM 14942", "accession": "GCA_001189915.1", "taxid": 180195, "species_taxid": 180195, "relation_to_type": "type", "validated": true, "ani": 77.3273, "matched_fragments": 223, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum saxi", "strain": "strain=K1R23-30", "accession": "GCA_003591035.1", "taxid": 2320863, "species_taxid": 2320863, "relation_to_type": "type", "validated": true, "ani": 77.3012, "matched_fragments": 199, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas silvisoli", "strain": "strain=RXD178", "accession": "GCA_018305005.1", "taxid": 2825884, "species_taxid": 2825884, "relation_to_type": "type", "validated": true, "ani": 77.2763, "matched_fragments": 197, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 77.2306, "matched_fragments": 156, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 77.1595, "matched_fragments": 214, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 77.0207, "matched_fragments": 186, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum massiliense", "strain": "strain=JC206", "accession": "GCA_000312045.1", "taxid": 1465823, "species_taxid": 1465823, "relation_to_type": "type", "validated": true, "ani": 76.9791, "matched_fragments": 180, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella phyllosphaerae", "strain": "strain=T54", "accession": "GCA_001758785.1", "taxid": 762836, "species_taxid": 762836, "relation_to_type": "type", "validated": true, "ani": 76.9276, "matched_fragments": 154, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella flava", "strain": "strain=CGMCC 1.10685", "accession": "GCA_007830495.1", "taxid": 871742, "species_taxid": 871742, "relation_to_type": "type", "validated": true, "ani": 76.8734, "matched_fragments": 109, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum galbum", "strain": "strain=17J57-3", "accession": "GCA_010974945.1", "taxid": 2709383, "species_taxid": 2709383, "relation_to_type": "type", "validated": true, "ani": 76.8587, "matched_fragments": 189, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, "relation_to_type": "type", "validated": true, "ani": 76.8523, "matched_fragments": 140, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium tructae", "strain": "strain=SNU WT3", "accession": "GCA_006517255.1", "taxid": 2590869, "species_taxid": 2590869, "relation_to_type": "type", "validated": true, "ani": 76.8216, "matched_fragments": 162, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 76.6928, "matched_fragments": 161, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aurea", "strain": "strain=JCM 13879", "accession": "GCA_024753205.1", "taxid": 373040, "species_taxid": 373040, "relation_to_type": "type", "validated": true, "ani": 76.6707, "matched_fragments": 146, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 76.639, "matched_fragments": 160, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium luofuense", "strain": "strain=LFS511W", "accession": "GCA_018139685.1", "taxid": 2828733, "species_taxid": 2828733, "relation_to_type": "type", "validated": true, "ani": 76.6203, "matched_fragments": 96, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aromaticivorans", "strain": "strain=ML15P13", "accession": "GCA_013003915.1", "taxid": 2725995, "species_taxid": 2725995, "relation_to_type": "type", "validated": true, "ani": 76.6059, "matched_fragments": 154, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 76.605, "matched_fragments": 146, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium squillarum", "strain": "strain=KCTC 23917", "accession": "GCA_014652435.1", "taxid": 1131567, "species_taxid": 1131567, "relation_to_type": "type", "validated": true, "ani": 76.5492, "matched_fragments": 111, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 76.5095, "matched_fragments": 154, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 76.4293, "matched_fragments": 154, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 75.9101, "matched_fragments": 65, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 75.8226, "matched_fragments": 84, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 75.8104, "matched_fragments": 83, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903872555.1", "gtdb_species": "s__SYFN01 sp903872555", "ani": 78.1157, "matched_fragments": 250, "total_fragments": 958, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SYFN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903904635.1", "gtdb_species": "s__SYFN01 sp903904635", "ani": 77.8142, "matched_fragments": 241, "total_fragments": 958, 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