{ "type": "genome", "identifier": "GCA_947453065.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947453065.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112173024", "wgs_master": "CANGFJ000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "Jr-25may17-45", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "Jr-25may17-45", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/453/065/GCA_947453065.1_Jr-25may17-45", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2749432", "Number of Sequences": "260", "Longest Sequences (bp)": "49086", "N50 (bp)": "13693", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "2287", "Average Protein Length": "331.6", "Coding Ratio (%)": "82.7", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Steroidobacter agariperforans", "strain": "strain=KA5-B", "accession": "GCA_004138335.1", "taxid": 268404, "species_taxid": 268404, "relation_to_type": "type", "validated": true, "ani": 77.1162, "matched_fragments": 123, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter gossypii", "strain": "strain=S1-65", "accession": "GCA_016801985.1", "taxid": 2805490, "species_taxid": 2805490, "relation_to_type": "type", "validated": true, "ani": 76.8885, "matched_fragments": 133, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Povalibacter uvarum", "strain": "strain=DSM 26723", "accession": "GCA_014202975.1", "taxid": 732238, "species_taxid": 732238, "relation_to_type": "type", "validated": true, "ani": 76.8511, "matched_fragments": 109, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter agaridevorans", "strain": "strain=SA29-B", "accession": "GCA_009932555.1", "taxid": 2695856, "species_taxid": 2695856, "relation_to_type": "type", "validated": true, "ani": 76.8436, "matched_fragments": 127, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter soli", "strain": "strain=JW-3", "accession": "GCA_004138485.1", "taxid": 2497877, "species_taxid": 2497877, "relation_to_type": "type", "validated": true, "ani": 76.7867, "matched_fragments": 127, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter 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"GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.5443, "matched_fragments": 99, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas yindakuii", "strain": "strain=S-1072", "accession": "GCA_004803715.2", "taxid": 2565782, "species_taxid": 2565782, "relation_to_type": "type", "validated": true, "ani": 76.5231, "matched_fragments": 95, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", "accession": "GCA_004352825.1", "taxid": 1586242, "species_taxid": 1586242, "relation_to_type": "type", "validated": true, "ani": 76.4473, "matched_fragments": 102, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, 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"matched_fragments": 93, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Immundisolibacter cernigliae", "strain": "strain=TR3.2", "accession": "GCA_001697225.1", "taxid": 1810504, "species_taxid": 1810504, "relation_to_type": "type", "validated": true, "ani": 76.2755, "matched_fragments": 91, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 76.2523, "matched_fragments": 121, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 76.2087, "matched_fragments": 82, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.2007, "matched_fragments": 79, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 76.1541, "matched_fragments": 129, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans subsp. natans", "strain": "strain=DSM 6575", "accession": "GCA_000689195.1", "taxid": 882627, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 76.0917, "matched_fragments": 136, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudofulvimonas gallinarii", "strain": "strain=DSM 21944", "accession": "GCA_004798975.1", "taxid": 634155, "species_taxid": 634155, "relation_to_type": "type", "validated": true, "ani": 76.0899, "matched_fragments": 90, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 76.059, "matched_fragments": 110, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 76.0589, "matched_fragments": 79, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", 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"GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.8522, "matched_fragments": 95, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=NBRC 12694", "accession": "GCA_002091755.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8229, "matched_fragments": 90, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=DSM 14399", "accession": "GCA_012986245.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8226, "matched_fragments": 90, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, 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