{ "type": "genome", "identifier": "GCA_947458265.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947458265.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112173679", "wgs_master": "CANGYF000000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "RE-18aug17-172", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "RE-18aug17-172", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/458/265/GCA_947458265.1_RE-18aug17-172", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.091 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4011251", "Number of Sequences": "33", "Longest Sequences (bp)": "344830", "N50 (bp)": "207210", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "3673", "Average Protein Length": "332.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 77.6724, "matched_fragments": 246, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6674, "matched_fragments": 221, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 77.6419, "matched_fragments": 261, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6241, "matched_fragments": 225, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 77.5301, "matched_fragments": 262, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 77.5228, "matched_fragments": 232, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 77.5059, "matched_fragments": 211, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 77.4887, "matched_fragments": 234, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 77.4465, "matched_fragments": 154, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter sedimenti", "strain": "strain=HX-7-9", "accession": "GCA_010435965.1", "taxid": 2705474, "species_taxid": 2705474, "relation_to_type": "type", "validated": true, "ani": 77.4439, "matched_fragments": 200, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 77.2762, "matched_fragments": 277, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aromatica", "strain": "strain=K172", "accession": "GCA_003030465.1", "taxid": 59405, "species_taxid": 59405, "relation_to_type": "type", "validated": true, "ani": 77.2692, "matched_fragments": 244, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 77.2648, "matched_fragments": 239, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 77.2374, "matched_fragments": 314, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 77.2113, "matched_fragments": 218, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.1059, "matched_fragments": 225, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.0589, "matched_fragments": 237, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 77.053, "matched_fragments": 250, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 77.0133, "matched_fragments": 284, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 76.8197, "matched_fragments": 216, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 76.8135, "matched_fragments": 236, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.7611, "matched_fragments": 338, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 76.7358, "matched_fragments": 323, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 76.7295, "matched_fragments": 294, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 76.677, "matched_fragments": 234, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 76.6678, "matched_fragments": 289, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter dolens", "strain": "strain=LMG 26840", "accession": "GCA_902859745.1", "taxid": 1287738, "species_taxid": 1287738, "relation_to_type": "type", "validated": true, "ani": 76.6119, "matched_fragments": 251, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, "relation_to_type": "type", "validated": true, "ani": 76.5313, "matched_fragments": 335, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella lactea", "strain": "strain=FT50W", "accession": "GCA_009857505.1", "taxid": 2692173, "species_taxid": 2692173, "relation_to_type": "type", "validated": true, "ani": 76.4527, "matched_fragments": 199, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella radicis", "strain": "strain=KCTC 22382", "accession": "GCA_009720825.1", "taxid": 551988, "species_taxid": 551988, "relation_to_type": "type", "validated": true, "ani": 76.4136, "matched_fragments": 198, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludibacterium paludis", "strain": "strain=BCRC 80514", "accession": "GCA_018802605.1", "taxid": 1225769, "species_taxid": 1225769, "relation_to_type": "type", "validated": true, "ani": 76.1596, "matched_fragments": 115, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludibacterium paludis", "strain": "strain=KCTC 32182", "accession": "GCA_014652495.1", "taxid": 1225769, "species_taxid": 1225769, "relation_to_type": "type", "validated": true, "ani": 76.1257, "matched_fragments": 113, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algiphilus aromaticivorans", "strain": "strain=DG1253", "accession": "GCA_000733765.1", "taxid": 382454, "species_taxid": 382454, "relation_to_type": "type", "validated": true, "ani": 75.7719, "matched_fragments": 99, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903873475.1", "gtdb_species": "s__CAIKXV01 sp903873475", "ani": 87.2454, "matched_fragments": 929, "total_fragments": 1322, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__CAIKXV01;g__CAIKXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903831455.1", "gtdb_species": "s__CAIKXV01 sp903831455", "ani": 80.0394, "matched_fragments": 674, "total_fragments": 1322, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__CAIKXV01;g__CAIKXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_014379045.1", "gtdb_species": "s__CAIKXV01 sp014379045", "ani": 79.8787, "matched_fragments": 556, 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