{ "type": "genome", "identifier": "GCA_947458545.1", "organism": "Cytophagaceae bacterium", "title": "Cytophagaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947458545.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112173744", "wgs_master": "CANGYH000000000.1", "refseq_category": "na", "taxid": "2026729", "species_taxid": "2026729", "organism_name": "Cytophagaceae bacterium", "infraspecific_name": "", "isolate": "RE-18aug17-75", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "RE-18aug17-75", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/458/545/GCA_947458545.1_RE-18aug17-75", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Cytophagaceae bacterium" ], "sample_taxid": [ "2026729" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3233599", "Number of Sequences": "9", "Longest Sequences (bp)": "1779799", "N50 (bp)": "1779799", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "2678", "Average Protein Length": "358.3", "Coding Ratio (%)": "89.0", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter amundsenii", "strain": "strain=CCM 8682", "accession": "GCA_002204745.1", "taxid": 2006685, "species_taxid": 2006685, "relation_to_type": "type", "validated": true, "ani": 76.1748, "matched_fragments": 50, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 76.1368, "matched_fragments": 63, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter elongatus", "strain": "strain=JCM 17223", "accession": "GCA_004745955.1", "taxid": 877208, "species_taxid": 877208, "relation_to_type": "type", "validated": true, "ani": 75.9327, "matched_fragments": 52, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter caeli", "strain": "strain=9A", "accession": "GCA_013294115.1", "taxid": 2735894, "species_taxid": 2735894, "relation_to_type": "type", "validated": true, "ani": 75.9255, "matched_fragments": 92, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter edaphi", "strain": "strain=NL", "accession": "GCA_003258365.1", "taxid": 2211146, "species_taxid": 2211146, "relation_to_type": "type", "validated": true, "ani": 75.92, "matched_fragments": 92, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 75.8631, "matched_fragments": 78, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 75.8051, "matched_fragments": 68, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 75.7658, "matched_fragments": 64, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter baengnokdamensis", "strain": "strain=BRD72", "accession": "GCA_008728635.1", "taxid": 2615203, "species_taxid": 2615203, "relation_to_type": "type", "validated": true, "ani": 75.7153, "matched_fragments": 60, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 75.6604, "matched_fragments": 72, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrophilus", "strain": "strain=CGMCC 1.8975", "accession": "GCA_900107135.1", "taxid": 651662, "species_taxid": 651662, "relation_to_type": "type", "validated": true, "ani": 75.6125, "matched_fragments": 74, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, 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