{ "type": "genome", "identifier": "GCA_947459005.1", "organism": "Planctomycetaceae bacterium", "title": "Planctomycetaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947459005.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112173734", "wgs_master": "CANHAU000000000.1", "refseq_category": "na", "taxid": "2026779", "species_taxid": "2026779", "organism_name": "Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "RE-18aug17-56", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/02", "asm_name": "RE-18aug17-56", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/459/005/GCA_947459005.1_RE-18aug17-56", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-02", "dateModified": "2022-12-02", "datePublished": "2022-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetaceae bacterium" ], "sample_taxid": [ "2026779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.664 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.56, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2431746", "Number of Sequences": "173", "Longest Sequences (bp)": "50633", "N50 (bp)": "19277", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "1862", "Average Protein Length": "364.3", "Coding Ratio (%)": "83.7", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phycisphaera mikurensis", "strain": "strain=DSM 103959", "accession": "GCA_014207395.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 76.2906, "matched_fragments": 66, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=NBRC 102666", "accession": "GCA_000284115.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 76.2673, "matched_fragments": 68, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algisphaera agarilytica", "strain": "strain=DSM 103725", "accession": "GCA_014207595.1", "taxid": 1385975, "species_taxid": 1385975, "relation_to_type": "type", "validated": true, "ani": 76.1532, "matched_fragments": 50, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucisphaera calidilacus", "strain": "strain=Pan265", "accession": "GCA_007748075.1", "taxid": 2527982, "species_taxid": 2527982, "relation_to_type": "type", "validated": true, "ani": 75.7621, "matched_fragments": 51, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 75.1631, "matched_fragments": 50, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 75.1122, "matched_fragments": 54, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 74.9436, "matched_fragments": 60, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea pusilla", "strain": "strain=DSM 43357", "accession": "GCA_900109355.1", "taxid": 46177, "species_taxid": 46177, "relation_to_type": "type", "validated": true, "ani": 74.8761, "matched_fragments": 67, "total_fragments": 732, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 5.56, 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