{ "type": "genome", "identifier": "GCA_947465985.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947465985.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112174476", "wgs_master": "CANIDJ000000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "RE-9nov16-79", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RE-9nov16-79", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/465/985/GCA_947465985.1_RE-9nov16-79", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.587 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2067496", "Number of Sequences": "294", "Longest Sequences (bp)": "31816", "N50 (bp)": "7868", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.9", "Number of CDSs": "1747", "Average Protein Length": "304.9", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Georgfuchsia toluolica", "strain": "strain=G5G6", "accession": "GCA_907163265.1", "taxid": 424218, "species_taxid": 424218, "relation_to_type": "type", "validated": true, "ani": 78.7273, "matched_fragments": 209, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6588, "matched_fragments": 138, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6488, "matched_fragments": 140, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 77.4975, "matched_fragments": 98, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_902813185.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 77.2609, "matched_fragments": 108, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_007844305.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 77.1696, "matched_fragments": 111, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 77.1374, "matched_fragments": 94, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 77.1283, "matched_fragments": 92, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 77.0323, "matched_fragments": 98, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus communis", "strain": "strain=SWub3", "accession": "GCA_012910815.1", "taxid": 41977, "species_taxid": 41977, "relation_to_type": "type", "validated": true, "ani": 76.9004, "matched_fragments": 70, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus communis", "strain": "strain=SWub3", "accession": "GCA_003226565.1", "taxid": 41977, "species_taxid": 41977, "relation_to_type": "type", "validated": true, "ani": 76.8786, "matched_fragments": 70, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 76.8513, "matched_fragments": 107, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 76.8143, "matched_fragments": 81, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 76.5494, "matched_fragments": 101, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus cauae", "strain": "strain=MKL-01", "accession": "GCA_008632125.1", "taxid": 2608999, "species_taxid": 2608999, "relation_to_type": "type", "validated": true, "ani": 76.2979, "matched_fragments": 90, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aerium", "strain": "strain=122213-3", "accession": "GCA_008929045.1", "taxid": 2588497, "species_taxid": 2588497, "relation_to_type": "type", "validated": true, "ani": 76.2753, "matched_fragments": 55, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 76.257, "matched_fragments": 75, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 76.1678, "matched_fragments": 52, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium piscinae", "strain": "strain=DSM 23278", "accession": "GCA_021129175.1", "taxid": 686831, "species_taxid": 686831, "relation_to_type": "type", "validated": true, "ani": 76.036, "matched_fragments": 55, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Andreprevotia lacus", "strain": "strain=DSM 23236", "accession": "GCA_900176275.1", "taxid": 1121000, "species_taxid": 1121000, "relation_to_type": "type", "validated": true, "ani": 76.0156, "matched_fragments": 57, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus lacunae", "strain": "strain=S23", "accession": "GCA_003353055.1", "taxid": 2666307, "species_taxid": 2666307, "relation_to_type": "type", "validated": true, "ani": 75.9347, "matched_fragments": 76, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 75.7032, "matched_fragments": 51, "total_fragments": 564, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007833355.1", "gtdb_species": "s__Denitratisoma sp007833355", "ani": 77.8863, "matched_fragments": 122, "total_fragments": 564, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Denitratisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016708585.1", "gtdb_species": "s__Sulfuritalea 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77.6219, "matched_fragments": 144, "total_fragments": 564, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001828935.1", "gtdb_species": "s__Sulfuritalea sp001828935", "ani": 77.6129, "matched_fragments": 116, "total_fragments": 564, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903848955.1", "gtdb_species": "s__Sulfuritalea sp903848955", "ani": 77.5867, "matched_fragments": 128, 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