{ "type": "genome", "identifier": "GCA_947475295.1", "organism": "Candidatus Marinimicrobia bacterium", "title": "Candidatus Marinimicrobia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947475295.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175435", "wgs_master": "CANJLF000000000.1", "refseq_category": "na", "taxid": "2026760", "species_taxid": "2026760", "organism_name": "Candidatus Marinimicrobia bacterium", "infraspecific_name": "", "isolate": "RH-23may17-65", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-23may17-65", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/475/295/GCA_947475295.1_RH-23may17-65", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Marinimicrobia bacterium" ], "sample_taxid": [ "2026760" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.765 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2704752", "Number of Sequences": "43", "Longest Sequences (bp)": "207622", "N50 (bp)": "103462", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "2564", "Average Protein Length": "315.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.8264, "matched_fragments": 103, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_000513295.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.71, "matched_fragments": 110, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodospirillum oryzae", "strain": "strain=NBRC 107573", "accession": "GCA_007992075.1", "taxid": 478448, "species_taxid": 478448, "relation_to_type": "type", "validated": true, "ani": 76.676, "matched_fragments": 66, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.6463, "matched_fragments": 109, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira navarrensis", "strain": "strain=DSM 15114", "accession": "GCA_009601025.1", "taxid": 140058, "species_taxid": 140058, "relation_to_type": "type", "validated": true, "ani": 76.5291, "matched_fragments": 94, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 76.5026, "matched_fragments": 93, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.4714, "matched_fragments": 132, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenispirillum salinarum", "strain": "strain=AK4", "accession": "GCA_000315795.1", "taxid": 859058, "species_taxid": 859058, "relation_to_type": "type", "validated": true, "ani": 76.4544, "matched_fragments": 144, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.3714, "matched_fragments": 111, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.355, "matched_fragments": 84, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 76.2142, "matched_fragments": 126, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella pratensis", "strain": "strain=W17", "accession": "GCA_008843145.1", "taxid": 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"type", "validated": true, "ani": 76.1633, "matched_fragments": 112, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 76.1404, "matched_fragments": 103, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 76.1346, "matched_fragments": 101, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 76.0879, "matched_fragments": 121, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_000237365.1", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 76.0788, "matched_fragments": 120, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_003119195.2", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 76.0751, "matched_fragments": 123, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY0552", "accession": "GCA_013340935.1", "taxid": 328839, "species_taxid": 328839, "relation_to_type": "type", "validated": true, "ani": 76.0713, "matched_fragments": 125, "total_fragments": 878, 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355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 75.9476, "matched_fragments": 141, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 75.9163, "matched_fragments": 81, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 75.9076, "matched_fragments": 85, "total_fragments": 878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, 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