{ "type": "genome", "identifier": "GCA_947475405.1", "organism": "Chitinophagaceae bacterium", "title": "Chitinophagaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947475405.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175455", "wgs_master": "CANJLA000000000.1", "refseq_category": "na", "taxid": "1869212", "species_taxid": "1869212", "organism_name": "Chitinophagaceae bacterium", "infraspecific_name": "", "isolate": "RH-23may17-720", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-23may17-720", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/475/405/GCA_947475405.1_RH-23may17-720", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophagaceae bacterium" ], "sample_taxid": [ "1869212" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.610 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2191520", "Number of Sequences": "22", "Longest Sequences (bp)": "284285", "N50 (bp)": "167117", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.4", "Number of CDSs": "1894", "Average Protein Length": "336.7", "Coding Ratio (%)": "87.3", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 75.9975, "matched_fragments": 81, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea sandarakina", "strain": "strain=DSM 23241", "accession": "GCA_003254115.1", "taxid": 1004304, "species_taxid": 1004304, "relation_to_type": "type", "validated": true, "ani": 75.562, "matched_fragments": 51, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea lipotrueae", "strain": "strain=TMF_100", "accession": "GCA_019249625.1", "taxid": 2803817, "species_taxid": 2803817, "relation_to_type": "type", "validated": true, "ani": 75.4776, "matched_fragments": 58, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ginsengibacter hankyongi", "strain": "strain=BR5-29", "accession": "GCA_008710285.1", "taxid": 2607284, "species_taxid": 2607284, "relation_to_type": "type", "validated": true, "ani": 75.4629, "matched_fragments": 55, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnovirga soli", "strain": "strain=KCS-6", "accession": "GCA_013106755.1", "taxid": 2656915, "species_taxid": 2656915, "relation_to_type": "type", "validated": true, "ani": 75.2199, "matched_fragments": 51, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903837525.1", "gtdb_species": "s__Ferruginibacter sp903837525", "ani": 98.5878, "matched_fragments": 652, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017988335.1", "gtdb_species": "s__Ferruginibacter sp017988335", "ani": 80.5614, "matched_fragments": 448, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016721385.1", "gtdb_species": "s__Ferruginibacter sp016721385", "ani": 79.2932, "matched_fragments": 435, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013141115.1", "gtdb_species": "s__Ferruginibacter sp013141115", "ani": 77.1039, "matched_fragments": 219, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017983695.1", "gtdb_species": "s__Ferruginibacter sp017983695", "ani": 77.0045, "matched_fragments": 220, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013141435.1", "gtdb_species": "s__Ferruginibacter sp013141435", "ani": 76.7633, "matched_fragments": 169, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710935.1", "gtdb_species": "s__Ferruginibacter sp016710935", "ani": 76.5019, "matched_fragments": 148, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016713965.1", "gtdb_species": "s__Ferruginibacter sp016713965", "ani": 76.3872, "matched_fragments": 132, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903858475.1", "gtdb_species": "s__Ferruginibacter sp903858475", "ani": 76.1324, "matched_fragments": 104, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_016786725.1", "gtdb_species": "s__Ferruginibacter sp016786725", "ani": 76.1062, "matched_fragments": 116, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268155.1", "gtdb_species": "s__Ferruginibacter sp018268155", "ani": 76.0807, "matched_fragments": 149, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898465.1", "gtdb_species": "s__Ferruginibacter sp001898465", "ani": 76.0749, "matched_fragments": 88, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016699815.1", "gtdb_species": "s__Ferruginibacter sp002381005", "ani": 75.9194, "matched_fragments": 89, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.94", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCA_903832075.1", "gtdb_species": "s__CAILAF01 sp903832075", "ani": 75.4821, "matched_fragments": 53, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008710285.1", "gtdb_species": "s__Ginsengibacter hankyongi", "ani": 75.4629, "matched_fragments": 55, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ginsengibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013106755.1", "gtdb_species": "s__Panacibacter sp013106755", "ani": 75.2199, "matched_fragments": 51, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.322, "cell_length": 0.364, "doubling_h": null, "growth_tmp": 30.538, "optimum_tmp": 29.829, "optimum_ph": 6.773, "genome_size": 5998721.602, "gc_content": 44.915, "coding_genes": 5429.047, "rRNA16S_genes": 3.5, "tRNA_genes": 54.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.225, "range_salinity": null, "facultative_respiration": 0.034, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.965, "mesophilic_range_tmp": 0.75, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.25, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Ferruginibacter", "s__Ferruginibacter sp903837525" ], "_genome_taxon": [ "Chitinophagaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__Ferruginibacter", "s__Ferruginibacter sp903837525", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Chitinophagaceae", "Ferruginibacter", "Ferruginibacter", "sp903837525" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }