{ "type": "genome", "identifier": "GCA_947475545.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947475545.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175429", "wgs_master": "CANJLL000000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "RH-23may17-645", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-23may17-645", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/475/545/GCA_947475545.1_RH-23may17-645", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3201736", "Number of Sequences": "19", "Longest Sequences (bp)": "930794", "N50 (bp)": "362446", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "2927", "Average Protein Length": "329.3", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litorilinea aerophila", "strain": "strain=ATCC BAA-2444", "accession": "GCA_006569185.2", "taxid": 1204385, "species_taxid": 1204385, "relation_to_type": "type", "validated": true, "ani": 75.4444, "matched_fragments": 57, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 75.3051, "matched_fragments": 71, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter marinus", "strain": "strain=SCSIO 52915", "accession": "GCA_011492965.1", "taxid": 2653852, "species_taxid": 2653852, "relation_to_type": "type", "validated": true, "ani": 75.1595, "matched_fragments": 66, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Symbiobacterium terraclitae", "strain": "strain=DSM 27138", "accession": "GCA_017874315.1", "taxid": 557451, "species_taxid": 557451, "relation_to_type": "type", "validated": true, "ani": 75.0669, "matched_fragments": 64, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia abyssalis", "strain": "strain=KRD168", "accession": "GCA_019263705.2", "taxid": 2792008, "species_taxid": 2792008, "relation_to_type": "type", "validated": true, "ani": 75.0613, "matched_fragments": 130, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 75.0459, "matched_fragments": 76, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix coeruleofusca", "strain": "strain=DSM 43679", "accession": "GCA_017876325.1", "taxid": 33919, "species_taxid": 33919, "relation_to_type": "type", "validated": true, "ani": 75.0454, "matched_fragments": 145, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 75.0346, "matched_fragments": 63, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 74.9881, "matched_fragments": 83, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea marina", "strain": "strain=SCSIO 60955", "accession": "GCA_018141525.1", "taxid": 2843215, "species_taxid": 2843215, "relation_to_type": "type", "validated": true, "ani": 74.969, "matched_fragments": 134, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas leprariae", "strain": "strain=YIM 132180", "accession": "GCA_008802405.1", "taxid": 2615207, "species_taxid": 2615207, "relation_to_type": "type", "validated": true, "ani": 74.9492, "matched_fragments": 54, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 74.9185, "matched_fragments": 154, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 74.9172, "matched_fragments": 72, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix coeruleofusca", "strain": "strain=JCM 3313", "accession": "GCA_014648515.1", "taxid": 33919, "species_taxid": 33919, "relation_to_type": "type", "validated": true, "ani": 74.9069, "matched_fragments": 148, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 74.8922, "matched_fragments": 186, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 74.8816, "matched_fragments": 209, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas abyssi", "strain": "strain=XH031", "accession": "GCA_001482195.1", "taxid": 1247514, "species_taxid": 1247514, "relation_to_type": "type", "validated": true, "ani": 74.8778, "matched_fragments": 65, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 74.8105, "matched_fragments": 148, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas massiliensis", "strain": "strain=SN8", "accession": "GCA_900018785.1", "taxid": 1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 74.7936, "matched_fragments": 78, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 74.7673, "matched_fragments": 79, "total_fragments": 1058, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903822495.1", "gtdb_species": "s__CAIJPD01 sp903822495", "ani": 93.8811, "matched_fragments": 927, "total_fragments": 1058, "gtdb_taxonomy": 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