{ "type": "genome", "identifier": "GCA_947475635.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947475635.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175355", "wgs_master": "CANJNB000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "RH-23may17-499", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-23may17-499", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/475/635/GCA_947475635.1_RH-23may17-499", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.556 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1935230", "Number of Sequences": "184", "Longest Sequences (bp)": "121070", "N50 (bp)": "12725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "1765", "Average Protein Length": "310.9", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter corsicus", "strain": "strain=AP-Melu-1000-A1", "accession": "GCA_018688255.1", "taxid": 2081042, "species_taxid": 2081042, "relation_to_type": "type", "validated": true, "ani": 76.8671, "matched_fragments": 61, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 76.6693, "matched_fragments": 74, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 76.6633, "matched_fragments": 71, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 76.6499, "matched_fragments": 77, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 76.3244, "matched_fragments": 70, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter antarcticus", "strain": "strain=LimPoW16", "accession": "GCA_013307245.1", "taxid": 1743162, "species_taxid": 1743162, "relation_to_type": "type", "validated": true, "ani": 76.3206, "matched_fragments": 75, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sinensis", "strain": "strain=MWH-HuW1", "accession": "GCA_001595985.1", "taxid": 1743157, "species_taxid": 1743157, "relation_to_type": "type", "validated": true, "ani": 76.2686, "matched_fragments": 72, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter acidiphobus", "strain": "strain=MWH-PoolGreenA3", "accession": "GCA_003065385.1", "taxid": 556053, "species_taxid": 556053, "relation_to_type": "type", "validated": true, "ani": 76.0619, "matched_fragments": 51, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter brandtiae", "strain": "strain=UB-Domo-W1", "accession": "GCA_002797575.1", "taxid": 1938816, "species_taxid": 1938816, "relation_to_type": "type", "validated": true, "ani": 76.0005, "matched_fragments": 63, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903918115.1", "gtdb_species": "s__Polynucleobacter sp903918115", "ani": 93.1711, "matched_fragments": 363, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903837335.1", "gtdb_species": "s__Polynucleobacter sp903837335", "ani": 91.8007, "matched_fragments": 359, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903944725.1", "gtdb_species": "s__Polynucleobacter sp903944725", "ani": 83.1238, "matched_fragments": 374, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCA_903900805.1", "gtdb_species": "s__Polynucleobacter sp903900805", "ani": 77.0458, "matched_fragments": 66, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001953355.1", "gtdb_species": "s__Polynucleobacter sphagniphilus", "ani": 76.7842, "matched_fragments": 73, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_018882055.1", "gtdb_species": "s__Polynucleobacter sp018882055", "ani": 76.4012, "matched_fragments": 63, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018688355.1", "gtdb_species": "s__Polynucleobacter sp018688355", "ani": 76.3694, "matched_fragments": 66, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013307245.1", "gtdb_species": "s__Polynucleobacter sp013307245", "ani": 76.3206, "matched_fragments": 75, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001595985.1", "gtdb_species": "s__Polynucleobacter sinensis", "ani": 76.2686, "matched_fragments": 72, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018500105.1", "gtdb_species": "s__Polynucleobacter sp018500105", "ani": 76.257, "matched_fragments": 63, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018882125.1", "gtdb_species": "s__Polynucleobacter sp018882125", "ani": 76.0031, "matched_fragments": 80, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018688375.1", "gtdb_species": "s__Polynucleobacter sp018688375", "ani": 75.9748, "matched_fragments": 65, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903846025.1", "gtdb_species": "s__Polynucleobacter sp903846025", "ani": 75.9302, "matched_fragments": 63, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.36", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 20, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.267, "cell_length": 0.119, "doubling_h": -0.007, "growth_tmp": 30.563, "optimum_tmp": 30.641, "optimum_ph": 6.554, "genome_size": 6983573.911, "gc_content": 63.546, "coding_genes": 5983.195, "rRNA16S_genes": 4.699, "tRNA_genes": 62.266, "gram_stain": 0.0, "sporulation": 0.026, "motility": 0.693, "range_salinity": 0.222, "facultative_respiration": 0.072, "anaerobic_respiration": 0.032, "aerobic_respiration": 0.895, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.967, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.021, "vibrio_cell_shape": 0.01, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Polynucleobacter", "s__Polynucleobacter sp947482555" ], "_genome_taxon": [ "Burkholderiaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Polynucleobacter", "s__Polynucleobacter sp947482555", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Polynucleobacter", "Polynucleobacter", "sp947482555" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }