{
    "type": "genome",
    "identifier": "GCA_947481025.1",
    "organism": "Methylococcaceae bacterium",
    "title": "Methylococcaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947481025.1",
        "bioproject": "PRJEB35770",
        "biosample": "SAMEA112175765",
        "wgs_master": "CANKFA000000000.1",
        "refseq_category": "na",
        "taxid": "1933926",
        "species_taxid": "1933926",
        "organism_name": "Methylococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RH-27jun17-212",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/04",
        "asm_name": "RH-27jun17-212",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/481/025/GCA_947481025.1_RH-27jun17-212",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-04",
    "dateModified": "2022-12-04",
    "datePublished": "2022-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylococcaceae bacterium"
        ],
        "sample_taxid": [
            "1933926"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.627 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2182538",
        "Number of Sequences": "253",
        "Longest Sequences (bp)": "41359",
        "N50 (bp)": "10869",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "1776",
        "Average Protein Length": "303.9",
        "Coding Ratio (%)": "74.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methylobacter tundripaludum",
                "strain": "strain=SV96",
                "accession": "GCA_000190755.3",
                "taxid": 173365,
                "species_taxid": 173365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9855,
                "matched_fragments": 93,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovulum psychrotolerans",
                "strain": "strain=Sph1",
                "accession": "GCA_002923755.1",
                "taxid": 1704499,
                "species_taxid": 1704499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1773,
                "matched_fragments": 50,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenothrix polyspora",
                "strain": "",
                "accession": "GCA_900163755.1",
                "taxid": 360316,
                "species_taxid": 360316,
                "relation_to_type": "reftype",
                "validated": true,
                "ani": 76.1526,
                "matched_fragments": 58,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_903939355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903908165.1",
                "gtdb_species": "s__KS41 sp903908165",
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                "matched_fragments": 262,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.88",
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                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903873045.1",
                "gtdb_species": "s__KS41 sp903873045",
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                "matched_fragments": 198,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903839795.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903863905.1",
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                "num_clustered_genomes": 33,
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            },
            {
                "accession": "GCA_002256465.1",
                "gtdb_species": "s__KS41 sp002256465",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_903859415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
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                "mean_intra_species_ani": "99.28",
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            },
            {
                "accession": "GCA_903934035.1",
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                "accession": "GCA_903866825.1",
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                "accession": "GCA_903839855.1",
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            {
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            },
            {
                "accession": "GCA_002862125.1",
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                "accession": "GCA_003584875.1",
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                "accession": "GCA_903910205.1",
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                "accession": "GCA_903918335.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.032,
        "cell_length": 0.184,
        "doubling_h": 1.929,
        "growth_tmp": 26.938,
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        "bacillus_cell_shape": 0.687,
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    "_gtdb_taxon": [
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        "g__Methylobacter_C",
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    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylobacter_C",
        "s__Methylobacter_C polyspora_A",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "Methylobacter",
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        "Methylobacter",
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        "polyspora",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}