{ "type": "genome", "identifier": "GCA_947481165.1", "organism": "Opitutaceae bacterium", "title": "Opitutaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947481165.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175886", "wgs_master": "CANKFE000000000.1", "refseq_category": "na", "taxid": "2006848", "species_taxid": "2006848", "organism_name": "Opitutaceae bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-57", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-57", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/481/165/GCA_947481165.1_RH-27jun17-57", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutaceae bacterium" ], "sample_taxid": [ "2006848" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 21.88, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1373795", "Number of Sequences": "277", "Longest Sequences (bp)": "14920", "N50 (bp)": "4972", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "902", "Average Protein Length": "329.0", "Coding Ratio (%)": "64.8", "Number of rRNAs": "0", "Number of tRNAs": "7", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 78.9093, "matched_fragments": 152, "total_fragments": 351, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 21.88, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903876795.1", "gtdb_species": "s__Rariglobus sp903876795", "ani": 79.8497, "matched_fragments": 171, "total_fragments": 351, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Rariglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007559335.1", "gtdb_species": "s__Rariglobus hedericola", "ani": 78.9093, "matched_fragments": 152, "total_fragments": 351, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Rariglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903904685.1", "gtdb_species": "s__Rariglobus sp903904685", "ani": 78.3378, "matched_fragments": 98, "total_fragments": 351, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Rariglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903825285.1", "gtdb_species": "s__Opi-474 sp903825285", "ani": 76.9697, "matched_fragments": 80, "total_fragments": 351, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": -0.398, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": null, "optimum_ph": 7.75, "genome_size": 5272321.702, "gc_content": 65.092, "coding_genes": 4656.944, "rRNA16S_genes": 1.0, "tRNA_genes": 51.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.25, "aerobic_respiration": 0.25, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Rariglobus", "s__" ], "_genome_taxon": [ "Opitutaceae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Rariglobus", "s__", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "Rariglobus", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }