{ "type": "genome", "identifier": "GCA_947481415.1", "organism": "Bradyrhizobiaceae bacterium", "title": "Bradyrhizobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947481415.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175817", "wgs_master": "CANKGQ000000000.1", "refseq_category": "na", "taxid": "2072420", "species_taxid": "2072420", "organism_name": "Bradyrhizobiaceae bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-319", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-319", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/481/415/GCA_947481415.1_RH-27jun17-319", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobiaceae bacterium" ], "sample_taxid": [ "2072420" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.735 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 31.25, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2641246", "Number of Sequences": "342", "Longest Sequences (bp)": "50634", "N50 (bp)": "8704", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "2330", "Average Protein Length": "293.1", "Coding Ratio (%)": "77.6", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 77.7981, "matched_fragments": 276, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 77.6697, "matched_fragments": 256, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 77.6565, "matched_fragments": 267, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 77.622, "matched_fragments": 269, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 77.5808, "matched_fragments": 272, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 77.5682, "matched_fragments": 261, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium jicamae", "strain": "strain=PAC68", "accession": "GCA_001440395.1", "taxid": 280332, "species_taxid": 280332, "relation_to_type": "type", "validated": true, "ani": 77.483, "matched_fragments": 265, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 77.4572, "matched_fragments": 277, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium yuanmingense", "strain": "strain=CCBAU 10071", "accession": "GCA_900094575.1", "taxid": 108015, "species_taxid": 108015, "relation_to_type": "type", "validated": true, "ani": 77.3955, "matched_fragments": 276, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 77.3837, "matched_fragments": 238, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=CECT 8374", "accession": "GCA_003610435.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 77.2534, "matched_fragments": 271, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=RIPI110", "accession": "GCA_002119765.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 77.2453, "matched_fragments": 275, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=CECT 8514", "accession": "GCA_011761465.1", "taxid": 1333996, "species_taxid": 1333996, "relation_to_type": "type", "validated": true, "ani": 76.9409, "matched_fragments": 195, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=DSM 29671", "accession": "GCA_004216635.1", "taxid": 1333996, "species_taxid": 1333996, "relation_to_type": "type", "validated": true, "ani": 76.9368, "matched_fragments": 197, "total_fragments": 729, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=GJW-30", "accession": "GCA_002355335.1", "taxid": 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