{ "type": "genome", "identifier": "GCA_947482155.1", "organism": "Planctomycetaceae bacterium", "title": "Planctomycetaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947482155.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175796", "wgs_master": "CANKIO000000000.1", "refseq_category": "na", "taxid": "2026779", "species_taxid": "2026779", "organism_name": "Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-271", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-271", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/482/155/GCA_947482155.1_RH-27jun17-271", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetaceae bacterium" ], "sample_taxid": [ "2026779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.769 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2711483", "Number of Sequences": "66", "Longest Sequences (bp)": "472845", "N50 (bp)": "87320", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "2207", "Average Protein Length": "366.9", "Coding Ratio (%)": "89.6", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903919715.1", "gtdb_species": "s__F1-60-MAGs104 sp903919715", "ani": 99.8591, "matched_fragments": 824, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "conclusive" }, { 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76.8705, "matched_fragments": 123, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005799205.1", "gtdb_species": "s__F1-60-MAGs104 sp005799205", "ani": 76.3317, "matched_fragments": 85, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_005799495.1", "gtdb_species": "s__F1-60-MAGs104 sp005799495", "ani": 76.3108, "matched_fragments": 52, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.007, "cell_length": 0.054, "doubling_h": 1.056, "growth_tmp": 27.45, "optimum_tmp": 27.449, "optimum_ph": 6.766, "genome_size": 6959115.728, "gc_content": 55.598, "coding_genes": 5253.416, "rRNA16S_genes": 1.571, "tRNA_genes": 54.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.083, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.916, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.666, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__F1-60-MAGs104", "s__F1-60-MAGs104 sp903919715" ], "_genome_taxon": [ "Planctomycetaceae", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__F1-60-MAGs104", "s__F1-60-MAGs104 sp903919715", "Bacteria", "Planctomycetota", "Phycisphaerae", "Phycisphaerales", "SM1A02", "F1-60-MAGs104", "F1-60-MAGs104", "sp903919715" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }