{ "type": "genome", "identifier": "GCA_947482385.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947482385.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175907", "wgs_master": "CANKKL000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "RH-9nov16-101", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-9nov16-101", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/482/385/GCA_947482385.1_RH-9nov16-101", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.441 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 40.15, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 76.4154, "matched_fragments": 53, "total_fragments": 405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 76.2416, "matched_fragments": 59, "total_fragments": 405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 76.2133, "matched_fragments": 61, "total_fragments": 405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 76.1125, "matched_fragments": 58, "total_fragments": 405, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 40.15, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903918115.1", "gtdb_species": "s__Polynucleobacter sp903918115", "ani": 98.093, "matched_fragments": 308, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903837335.1", "gtdb_species": "s__Polynucleobacter sp903837335", "ani": 93.5046, "matched_fragments": 298, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903944725.1", "gtdb_species": "s__Polynucleobacter sp903944725", "ani": 82.158, "matched_fragments": 323, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_018881635.1", "gtdb_species": "s__Polynucleobacter sp018881635", "ani": 76.7369, "matched_fragments": 59, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018882125.1", "gtdb_species": "s__Polynucleobacter sp018882125", "ani": 76.6581, "matched_fragments": 51, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018687495.1", "gtdb_species": "s__Polynucleobacter sp018687495", "ani": 76.5139, "matched_fragments": 52, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018687455.1", "gtdb_species": "s__Polynucleobacter sp001870365", "ani": 76.4732, "matched_fragments": 56, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.21", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018882445.1", "gtdb_species": "s__Polynucleobacter sp018882445", "ani": 76.4417, "matched_fragments": 55, "total_fragments": 405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.267, "cell_length": 0.119, "doubling_h": -0.007, "growth_tmp": 30.563, "optimum_tmp": 30.641, "optimum_ph": 6.554, "genome_size": 6983573.911, "gc_content": 63.546, "coding_genes": 5983.195, "rRNA16S_genes": 4.699, "tRNA_genes": 62.266, "gram_stain": 0.0, "sporulation": 0.026, "motility": 0.693, "range_salinity": 0.222, "facultative_respiration": 0.072, "anaerobic_respiration": 0.032, "aerobic_respiration": 0.895, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, 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