{ "type": "genome", "identifier": "GCA_947482415.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947482415.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175879", "wgs_master": "CANKKO000000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-474", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-474", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/482/415/GCA_947482415.1_RH-27jun17-474", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.41, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1854261", "Number of Sequences": "380", "Longest Sequences (bp)": "16742", "N50 (bp)": "4843", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "1407", "Average Protein Length": "298.3", "Coding Ratio (%)": "67.9", "Number of rRNAs": "0", "Number of tRNAs": "11", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 77.1094, "matched_fragments": 83, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.0584, "matched_fragments": 81, 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"below_threshold" }, { "organism_name": "Cupriavidus alkaliphilus", "strain": "strain=ASC-732", "accession": "GCA_900094595.1", "taxid": 942866, "species_taxid": 942866, "relation_to_type": "type", "validated": true, "ani": 76.8588, "matched_fragments": 95, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 76.834, "matched_fragments": 79, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 76.6976, "matched_fragments": 88, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 76.613, "matched_fragments": 72, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=ATCC 27511", "accession": "GCA_000743455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 76.5584, "matched_fragments": 61, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum cavernae", "strain": "strain=K2R10-39", "accession": "GCA_003590875.1", "taxid": 2320862, "species_taxid": 2320862, "relation_to_type": "type", "validated": true, "ani": 76.5581, "matched_fragments": 52, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia catudaia", "strain": "", "accession": "GCA_001544755.2", "taxid": 1777136, "species_taxid": 1777136, "relation_to_type": "type", "validated": true, "ani": 76.5521, "matched_fragments": 60, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 76.4971, "matched_fragments": 60, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus cauae", "strain": "strain=MKL-01", "accession": "GCA_008632125.1", "taxid": 2608999, "species_taxid": 2608999, "relation_to_type": "type", "validated": true, "ani": 76.4958, "matched_fragments": 95, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 76.4574, "matched_fragments": 84, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4492, "matched_fragments": 81, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 76.3884, "matched_fragments": 85, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera terpenica", "strain": "strain=58Eu", "accession": "GCA_000443165.1", "taxid": 76113, "species_taxid": 76113, "relation_to_type": "type", "validated": true, "ani": 76.3828, "matched_fragments": 63, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.3288, "matched_fragments": 76, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=ATCC 33617", "accession": "GCA_000960995.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 76.2855, "matched_fragments": 83, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=LMG 2196", "accession": "GCA_902832765.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 76.2794, "matched_fragments": 82, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia choica", "strain": "", "accession": "GCA_001544535.2", "taxid": 326476, "species_taxid": 326476, "relation_to_type": "type", "validated": true, "ani": 76.1457, "matched_fragments": 68, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia arvi", "strain": "", "accession": "GCA_001544695.2", "taxid": 1777135, "species_taxid": 1777135, "relation_to_type": "type", "validated": true, "ani": 76.0937, "matched_fragments": 61, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitiniphilus shinanonensis", "strain": "strain=DSM 23277", "accession": "GCA_000374805.1", "taxid": 553088, "species_taxid": 553088, "relation_to_type": "type", "validated": true, "ani": 76.0488, "matched_fragments": 76, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia pedi", "strain": "", "accession": "GCA_001544915.2", "taxid": 1777141, "species_taxid": 1777141, "relation_to_type": "type", "validated": true, "ani": 75.8448, "matched_fragments": 68, "total_fragments": 473, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.41, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903928055.1", "gtdb_species": "s__CAIYPG01 sp903928055", "ani": 78.64, "matched_fragments": 143, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__CAIYPG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016867955.1", "gtdb_species": "s__CAIYPG01 sp016867955", "ani": 77.9586, "matched_fragments": 95, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__CAIYPG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903909415.1", "gtdb_species": "s__CAIVVS01 sp903909415", "ani": 77.4957, "matched_fragments": 127, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__CAIVVS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016868295.1", "gtdb_species": "s__Desulfobacillus sp016868295", "ani": 77.348, "matched_fragments": 88, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Desulfobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003242425.1", "gtdb_species": "s__ZC4RG42 sp003242425", "ani": 77.3396, "matched_fragments": 57, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__ZC4RG42", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016713125.1", "gtdb_species": "s__SZAS-79 sp016713125", "ani": 77.317, "matched_fragments": 95, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SZAS-79", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017347485.1", "gtdb_species": "s__Desulfobacillus denitrificans", "ani": 77.2764, "matched_fragments": 95, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Desulfobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903868285.1", "gtdb_species": "s__CAIPUP01 sp903868285", "ani": 77.2401, "matched_fragments": 50, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__CAIPUP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.37", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014860355.1", "gtdb_species": "s__2-12-FULL-64-23 sp014860355", "ani": 77.166, "matched_fragments": 74, "total_fragments": 473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__2-12-FULL-64-23", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004298385.1", "gtdb_species": "s__2-12-FULL-64-23 sp004298385", "ani": 77.1344, "matched_fragments": 88, "total_fragments": 473, "gtdb_taxonomy": 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