{ "type": "genome", "identifier": "GCA_947482595.1", "organism": "Comamonadaceae bacterium", "title": "Comamonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947482595.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175838", "wgs_master": "CANKKV000000000.1", "refseq_category": "na", "taxid": "1871071", "species_taxid": "1871071", "organism_name": "Comamonadaceae bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-381", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-381", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/482/595/GCA_947482595.1_RH-27jun17-381", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonadaceae bacterium" ], "sample_taxid": [ "1871071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.655 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 6.63, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2331492", "Number of Sequences": "439", "Longest Sequences (bp)": "22944", "N50 (bp)": "5478", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "1816", "Average Protein Length": "305.5", "Coding Ratio (%)": "71.4", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 77.8384, "matched_fragments": 217, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax beijingensis", "strain": "strain=502", "accession": "GCA_003951285.1", "taxid": 2496117, "species_taxid": 2496117, "relation_to_type": "type", "validated": true, "ani": 77.7519, "matched_fragments": 216, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 77.7351, "matched_fragments": 177, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 77.6272, "matched_fragments": 193, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 77.5772, "matched_fragments": 224, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 77.5589, "matched_fragments": 193, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 77.4965, "matched_fragments": 174, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CECT 7646", "accession": "GCA_003217575.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 77.4807, "matched_fragments": 173, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter henchirensis", "strain": "strain=DSM 14656", "accession": "GCA_004682015.1", 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"type", "validated": true, "ani": 77.3912, "matched_fragments": 198, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 77.3549, "matched_fragments": 165, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenimonas koreensis", "strain": "strain=EMB320", "accession": "GCA_009646335.1", "taxid": 367474, "species_taxid": 367474, "relation_to_type": "type", "validated": true, "ani": 77.2696, "matched_fragments": 152, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter ruginosibacter", "strain": "strain=DSM 27467", "accession": "GCA_014395975.1", "taxid": 1715720, "species_taxid": 1715720, "relation_to_type": "type", "validated": true, "ani": 77.2366, 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