{ "type": "genome", "identifier": "GCA_947482615.1", "organism": "Verrucomicrobiaceae bacterium", "title": "Verrucomicrobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947482615.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112175830", "wgs_master": "CANKLB000000000.1", "refseq_category": "na", "taxid": "2026800", "species_taxid": "2026800", "organism_name": "Verrucomicrobiaceae bacterium", "infraspecific_name": "", "isolate": "RH-27jun17-354", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "RH-27jun17-354", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/482/615/GCA_947482615.1_RH-27jun17-354", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiaceae bacterium" ], "sample_taxid": [ "2026800" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.258 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.23, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4424801", "Number of Sequences": "650", "Longest Sequences (bp)": "56827", "N50 (bp)": "7396", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "3009", "Average Protein Length": "343.5", "Coding Ratio (%)": "70.1", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 77.6166, "matched_fragments": 372, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 77.1665, "matched_fragments": 220, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 77.1551, "matched_fragments": 275, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter dejongeii", "strain": "strain=DSM 12251", "accession": "GCA_014203045.1", "taxid": 48465, "species_taxid": 48465, "relation_to_type": "type", "validated": true, "ani": 77.0528, "matched_fragments": 210, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 76.8271, "matched_fragments": 198, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.0598, "matched_fragments": 106, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 75.9792, "matched_fragments": 103, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.23, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903960845.1", "gtdb_species": "s__Prosthecobacter sp903960845", "ani": 94.9128, "matched_fragments": 913, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903838675.1", "gtdb_species": "s__Prosthecobacter sp903838675", "ani": 77.6777, "matched_fragments": 294, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_007992435.1", "gtdb_species": "s__Prosthecobacter gellanilyticus", "ani": 77.6345, "matched_fragments": 369, "total_fragments": 1194, 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"gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364345.1", "gtdb_species": "s__Prosthecobacter fusiformis", "ani": 77.1783, "matched_fragments": 219, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900167535.1", "gtdb_species": "s__Prosthecobacter debontii", "ani": 76.8342, "matched_fragments": 198, "total_fragments": 1194, 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"Verrucomicrobiota", "Verrucomicrobiae", "Verrucomicrobiales", "Verrucomicrobiaceae", "Prosthecobacter", "Prosthecobacter", "sp947477755" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }