{
    "type": "genome",
    "identifier": "GCA_947484165.1",
    "organism": "Methylococcaceae bacterium",
    "title": "Methylococcaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947484165.1",
        "bioproject": "PRJEB35770",
        "biosample": "SAMEA112176012",
        "wgs_master": "CANKOR000000000.1",
        "refseq_category": "na",
        "taxid": "1933926",
        "species_taxid": "1933926",
        "organism_name": "Methylococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RH-9nov16-384",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/04",
        "asm_name": "RH-9nov16-384",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/484/165/GCA_947484165.1_RH-9nov16-384",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-04",
    "dateModified": "2022-12-04",
    "datePublished": "2022-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylococcaceae bacterium"
        ],
        "sample_taxid": [
            "1933926"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.776 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.73,
        "contamination": 1.04,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2708136",
        "Number of Sequences": "305",
        "Longest Sequences (bp)": "44376",
        "N50 (bp)": "11324",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.6",
        "Number of CDSs": "2308",
        "Average Protein Length": "295.5",
        "Coding Ratio (%)": "75.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylobacter tundripaludum",
                "strain": "strain=SV96",
                "accession": "GCA_000190755.3",
                "taxid": 173365,
                "species_taxid": 173365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9193,
                "matched_fragments": 87,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovulum psychrotolerans",
                "strain": "strain=Sph1",
                "accession": "GCA_002923755.1",
                "taxid": 1704499,
                "species_taxid": 1704499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6305,
                "matched_fragments": 62,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacter marinus",
                "strain": "strain=A45",
                "accession": "GCA_000383855.1",
                "taxid": 34058,
                "species_taxid": 34058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.408,
                "matched_fragments": 51,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovulum miyakonense",
                "strain": "strain=HT12",
                "accession": "GCA_000384075.1",
                "taxid": 645578,
                "species_taxid": 645578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3544,
                "matched_fragments": 58,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenothrix polyspora",
                "strain": "",
                "accession": "GCA_900163755.1",
                "taxid": 360316,
                "species_taxid": 360316,
                "relation_to_type": "reftype",
                "validated": true,
                "ani": 75.7792,
                "matched_fragments": 78,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.73,
            "contamination": 1.04,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003584895.1",
                "gtdb_species": "s__KS41 sp003584895",
                "ani": 87.2711,
                "matched_fragments": 448,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_903905335.1",
                "gtdb_species": "s__KS41 sp903905335",
                "ani": 85.4941,
                "matched_fragments": 448,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903910205.1",
                "gtdb_species": "s__KS41 sp903910205",
                "ani": 85.2768,
                "matched_fragments": 449,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903934035.1",
                "gtdb_species": "s__KS41 sp903934035",
                "ani": 83.1313,
                "matched_fragments": 483,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003584875.1",
                "gtdb_species": "s__KS41 sp003584875",
                "ani": 82.9056,
                "matched_fragments": 481,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_903873165.1",
                "gtdb_species": "s__KS41 sp903873165",
                "ani": 77.37,
                "matched_fragments": 121,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903917345.1",
                "gtdb_species": "s__KS41 sp903917345",
                "ani": 77.3214,
                "matched_fragments": 130,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 10,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.032,
        "cell_length": 0.184,
        "doubling_h": 1.929,
        "growth_tmp": 26.938,
        "optimum_tmp": 29.642,
        "optimum_ph": 7.321,
        "genome_size": 4860515.519,
        "gc_content": 53.393,
        "coding_genes": 4340.777,
        "rRNA16S_genes": 2.4,
        "tRNA_genes": 49.75,
        "gram_stain": 0.0,
        "sporulation": 0.066,
        "motility": 0.625,
        "range_salinity": 0.0,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.25,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.687,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.062,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylobacter_C",
        "s__Methylobacter_C sp945903675"
    ],
    "_genome_taxon": [
        "Methylococcaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylobacter_C",
        "s__Methylobacter_C sp945903675",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "Methylobacter",
        "C",
        "Methylobacter",
        "C",
        "sp945903675"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}