{ "type": "genome", "identifier": "GCA_947484295.1", "organism": "Alcaligenaceae bacterium", "title": "Alcaligenaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947484295.1", "bioproject": "PRJEB35640", "biosample": "SAMEA112176109", "wgs_master": "CANKOW000000000.1", "refseq_category": "na", "taxid": "2021368", "species_taxid": "2021368", "organism_name": "Alcaligenaceae bacterium", "infraspecific_name": "", "isolate": "TE-Jun18-5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "TE-Jun18-5", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/484/295/GCA_947484295.1_TE-Jun18-5", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcaligenaceae bacterium" ], "sample_taxid": [ "2021368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.018 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.2, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3550000", "Number of Sequences": "330", "Longest Sequences (bp)": "82615", "N50 (bp)": "14185", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.5", "Number of CDSs": "3008", "Average Protein Length": "318.1", "Coding Ratio (%)": "80.9", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zwartia hollandica", "strain": "strain=LF4-65", "accession": "GCA_019923725.1", "taxid": 324606, "species_taxid": 324606, "relation_to_type": "type", "validated": true, "ani": 77.5711, "matched_fragments": 133, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jezberella montanilacus", "strain": "strain=MWH-P2sevCIIIb", "accession": "GCA_003003055.1", "taxid": 323426, "species_taxid": 323426, "relation_to_type": "type", "validated": true, "ani": 76.8445, "matched_fragments": 78, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sheuella amnicola", "strain": "strain=NBD-18", "accession": "GCA_010499255.1", "taxid": 2707330, "species_taxid": 2707330, "relation_to_type": "type", "validated": true, "ani": 76.6569, "matched_fragments": 95, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 75.9864, "matched_fragments": 60, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 75.9627, "matched_fragments": 61, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=LMG 26219", "accession": "GCA_902859635.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 75.9446, "matched_fragments": 60, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pestifer", "strain": "strain=LMG 3431", "accession": "GCA_902859625.1", "taxid": 1353889, "species_taxid": 1353889, "relation_to_type": "type", "validated": true, "ani": 75.8004, "matched_fragments": 54, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 75.7569, "matched_fragments": 57, "total_fragments": 1031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=NBRC 102461", 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