{
    "type": "genome",
    "identifier": "GCA_947484415.1",
    "organism": "Opitutae bacterium",
    "title": "Opitutae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947484415.1",
        "bioproject": "PRJEB35770",
        "biosample": "SAMEA112176132",
        "wgs_master": "CANKPG000000000.1",
        "refseq_category": "na",
        "taxid": "2026771",
        "species_taxid": "2026771",
        "organism_name": "Opitutae bacterium",
        "infraspecific_name": "",
        "isolate": "TH-Jun18-117",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/04",
        "asm_name": "TH-Jun18-117",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/484/415/GCA_947484415.1_TH-Jun18-117",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-04",
    "dateModified": "2022-12-04",
    "datePublished": "2022-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Opitutae bacterium"
        ],
        "sample_taxid": [
            "2026771"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.697 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.58,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2474036",
        "Number of Sequences": "404",
        "Longest Sequences (bp)": "31665",
        "N50 (bp)": "6246",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.9",
        "Number of CDSs": "1734",
        "Average Protein Length": "329.9",
        "Coding Ratio (%)": "69.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nibricoccus aquaticus",
                "strain": "strain=HZ-65",
                "accession": "GCA_002310495.1",
                "taxid": 2576891,
                "species_taxid": 2576891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7639,
                "matched_fragments": 139,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rariglobus hedericola",
                "strain": "strain=53C-WASEF",
                "accession": "GCA_007559335.1",
                "taxid": 2597822,
                "species_taxid": 2597822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6833,
                "matched_fragments": 136,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geminisphaera colitermitum",
                "strain": "strain=TAV2",
                "accession": "GCA_000171235.2",
                "taxid": 1148786,
                "species_taxid": 1148786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8811,
                "matched_fragments": 84,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cephaloticoccus primus",
                "strain": "strain=CAG34",
                "accession": "GCA_001580015.1",
                "taxid": 1548207,
                "species_taxid": 1548207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.743,
                "matched_fragments": 68,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ereboglobus luteus",
                "strain": "strain=Ho45",
                "accession": "GCA_003096195.1",
                "taxid": 1796921,
                "species_taxid": 1796921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6173,
                "matched_fragments": 77,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Opitutus terrae",
                "strain": "strain=PB90-1",
                "accession": "GCA_000019965.1",
                "taxid": 107709,
                "species_taxid": 107709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4963,
                "matched_fragments": 121,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.58,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002737275.1",
                "gtdb_species": "s__Tous-C4FEB sp002737275",
                "ani": 95.1981,
                "matched_fragments": 440,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002304445.1",
                "gtdb_species": "s__Tous-C4FEB sp002304445",
                "ani": 93.1372,
                "matched_fragments": 566,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_014376585.1",
                "gtdb_species": "s__Tous-C4FEB sp014376585",
                "ani": 80.5146,
                "matched_fragments": 364,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903938935.1",
                "gtdb_species": "s__Tous-C4FEB sp903938935",
                "ani": 80.025,
                "matched_fragments": 264,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009919985.1",
                "gtdb_species": "s__Tous-C4FEB sp009919985",
                "ani": 79.2068,
                "matched_fragments": 213,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903948415.1",
                "gtdb_species": "s__CAITWF01 sp903948415",
                "ani": 78.7083,
                "matched_fragments": 289,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002310495.1",
                "gtdb_species": "s__Nibricoccus aquaticus",
                "ani": 77.8134,
                "matched_fragments": 137,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Nibricoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Tous-C4FEB",
        "s__Tous-C4FEB sp945882935"
    ],
    "_genome_taxon": [
        "Opitutae",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Tous-C4FEB",
        "s__Tous-C4FEB sp945882935",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "Opitutaceae",
        "Tous-C4FEB",
        "Tous-C4FEB",
        "sp945882935"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}