{
    "type": "genome",
    "identifier": "GCA_947486055.1",
    "organism": "Methylophilaceae bacterium",
    "title": "Methylophilaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947486055.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA112176063",
        "wgs_master": "CANKRS000000000.1",
        "refseq_category": "na",
        "taxid": "2030816",
        "species_taxid": "2030816",
        "organism_name": "Methylophilaceae bacterium",
        "infraspecific_name": "",
        "isolate": "TE-Jun18-199",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/04",
        "asm_name": "TE-Jun18-199",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/486/055/GCA_947486055.1_TE-Jun18-199",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-04",
    "dateModified": "2022-12-04",
    "datePublished": "2022-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylophilaceae bacterium"
        ],
        "sample_taxid": [
            "2030816"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.501 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.58,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1760696",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "136414",
        "N50 (bp)": "33352",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "1634",
        "Average Protein Length": "306.4",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methylotenera versatilis",
                "strain": "strain=301",
                "accession": "GCA_000093025.1",
                "taxid": 1055487,
                "species_taxid": 1055487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4594,
                "matched_fragments": 138,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylotenera oryzisoli",
                "strain": "strain=La3113",
                "accession": "GCA_004661485.1",
                "taxid": 2080758,
                "species_taxid": 2080758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9831,
                "matched_fragments": 106,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylophilus methylotrophus",
                "strain": "strain=ATCC 53528",
                "accession": "GCA_000378225.1",
                "taxid": 17,
                "species_taxid": 17,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5466,
                "matched_fragments": 57,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methyloradius palustris",
                "strain": "strain=Zm11",
                "accession": "GCA_019703875.1",
                "taxid": 2778876,
                "species_taxid": 2778876,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1242,
                "matched_fragments": 69,
                "total_fragments": 554,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.58,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002083635.1",
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                "matched_fragments": 436,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.09",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000384375.1",
                "gtdb_species": "s__Methylotenera_A versatilis_B",
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                "matched_fragments": 320,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000799165.1",
                "gtdb_species": "s__Methylotenera_A versatilis_A",
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                "matched_fragments": 302,
                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141075.1",
                "gtdb_species": "s__Methylotenera sp013141075",
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                "matched_fragments": 151,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013141425.1",
                "gtdb_species": "s__Methylotenera sp013141425",
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                "total_fragments": 554,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001803395.1",
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                "matched_fragments": 134,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_014378845.1",
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            },
            {
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            },
            {
                "accession": "GCA_000525025.1",
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                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.39",
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            },
            {
                "accession": "GCA_013140755.1",
                "gtdb_species": "s__Methylotenera sp013140755",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002281475.1",
                "gtdb_species": "s__Methylophilus sp002281475",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylophilus",
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            },
            {
                "accession": "GCA_903846555.1",
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            {
                "accession": "GCA_001464125.1",
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            },
            {
                "accession": "GCA_002414145.1",
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            {
                "accession": "GCA_903854305.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.503,
        "cell_length": 0.048,
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        "growth_tmp": 30.333,
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        "bacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Methylophilaceae",
        "g__Methylotenera_A",
        "s__Methylotenera_A oryzisoli_A"
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    "_genome_taxon": [
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        "bacterium",
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        "c__Gammaproteobacteria",
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        "f__Methylophilaceae",
        "g__Methylotenera_A",
        "s__Methylotenera_A oryzisoli_A",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Methylophilaceae",
        "Methylotenera",
        "A",
        "Methylotenera",
        "A",
        "oryzisoli",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}