{
    "type": "genome",
    "identifier": "GCA_947486245.1",
    "organism": "Synechococcus lacustris",
    "title": "Synechococcus lacustris",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947486245.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA112176097",
        "wgs_master": "CANKTE000000000.1",
        "refseq_category": "na",
        "taxid": "2116544",
        "species_taxid": "2116544",
        "organism_name": "Synechococcus lacustris",
        "infraspecific_name": "",
        "isolate": "TE-Jun18-294",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/04",
        "asm_name": "TE-Jun18-294",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/486/245/GCA_947486245.1_TE-Jun18-294",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-04",
    "dateModified": "2022-12-04",
    "datePublished": "2022-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synechococcus lacustris"
        ],
        "sample_taxid": [
            "2116544"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.323 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.94,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1138368",
        "Number of Sequences": "164",
        "Longest Sequences (bp)": "24010",
        "N50 (bp)": "7588",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "1076",
        "Average Protein Length": "275.3",
        "Coding Ratio (%)": "78.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Synechococcus lacustris",
                "strain": "strain=Tous",
                "accession": "GCA_003011125.1",
                "taxid": 2116544,
                "species_taxid": 2116544,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 98.6537,
                "matched_fragments": 300,
                "total_fragments": 313,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 81.94,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003011125.1",
                "gtdb_species": "s__Synechococcus_D lacustris",
                "ani": 98.6537,
                "matched_fragments": 300,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.83",
                "min_intra_species_ani": "95.10",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 20,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009914645.1",
                "gtdb_species": "s__Synechococcus_D sp009914645",
                "ani": 80.0543,
                "matched_fragments": 133,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903943975.1",
                "gtdb_species": "s__Synechococcus_D lacustris_A",
                "ani": 78.0179,
                "matched_fragments": 137,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 31,
                "status": "-"
            },
            {
                "accession": "GCF_002252635.1",
                "gtdb_species": "s__MW101C3 sp002252635",
                "ani": 77.1392,
                "matched_fragments": 55,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__MW101C3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002252665.1",
                "gtdb_species": "s__Cyanobium_A sp002252665",
                "ani": 77.1125,
                "matched_fragments": 60,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903871775.1",
                "gtdb_species": "s__CAIQIA01 sp903871775",
                "ani": 77.1019,
                "matched_fragments": 62,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__CAIQIA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_903934745.1",
                "gtdb_species": "s__Cyanobium sp903934745",
                "ani": 76.9229,
                "matched_fragments": 58,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002470305.1",
                "gtdb_species": "s__RCC307 sp002470305",
                "ani": 76.9188,
                "matched_fragments": 60,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__RCC307",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903855705.1",
                "gtdb_species": "s__BAIKAL-G1 sp903855705",
                "ani": 76.673,
                "matched_fragments": 66,
                "total_fragments": 313,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__BAIKAL-G1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_D",
        "s__Synechococcus_D lacustris"
    ],
    "_genome_taxon": [
        "Synechococcus",
        "lacustris",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_D",
        "s__Synechococcus_D lacustris",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Synechococcus",
        "D",
        "Synechococcus",
        "D",
        "lacustris"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}