{ "type": "genome", "identifier": "GCA_947486565.1", "organism": "Comamonadaceae bacterium", "title": "Comamonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947486565.1", "bioproject": "PRJEB35640", "biosample": "SAMEA112176048", "wgs_master": "CANKTV000000000.1", "refseq_category": "na", "taxid": "1871071", "species_taxid": "1871071", "organism_name": "Comamonadaceae bacterium", "infraspecific_name": "", "isolate": "TE-Jun18-120", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "TE-Jun18-120", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/486/565/GCA_947486565.1_TE-Jun18-120", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonadaceae bacterium" ], "sample_taxid": [ "1871071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.514 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.94, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1804669", "Number of Sequences": "282", "Longest Sequences (bp)": "24419", "N50 (bp)": "7124", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.4", "Number of CDSs": "1584", "Average Protein Length": "286.5", "Coding Ratio (%)": "75.4", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 77.1401, "matched_fragments": 107, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 76.9568, "matched_fragments": 103, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 76.9167, "matched_fragments": 119, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 76.8836, "matched_fragments": 134, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 76.5919, "matched_fragments": 77, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 76.578, "matched_fragments": 69, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 76.4924, "matched_fragments": 76, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", "strain": "strain=N35", "accession": "GCA_000204195.2", "taxid": 758826, "species_taxid": 758826, "relation_to_type": "type", "validated": true, "ani": 76.4661, "matched_fragments": 71, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 76.3004, "matched_fragments": 64, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 76.2076, "matched_fragments": 63, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 76.1633, "matched_fragments": 61, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, "species_taxid": 747304, "relation_to_type": "type", "validated": true, "ani": 76.0401, "matched_fragments": 59, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 75.9034, "matched_fragments": 65, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 75.8826, "matched_fragments": 64, "total_fragments": 483, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.94, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903887325.1", "gtdb_species": "s__Limnohabitans sp903887325", "ani": 82.8913, "matched_fragments": 320, 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