{ "type": "genome", "identifier": "GCA_947489095.1", "organism": "Flavobacteriales bacterium", "title": "Flavobacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Zurich", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947489095.1", "bioproject": "PRJNA428721", "biosample": "SAMEA112176440", "wgs_master": "CANLCL000000000.1", "refseq_category": "na", "taxid": "2021391", "species_taxid": "2021391", "organism_name": "Flavobacteriales bacterium", "infraspecific_name": "", "isolate": "ZE-17mar17-159", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "ZE-17mar17-159", "submitter": "University of Zurich", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/489/095/GCA_947489095.1_ZE-17mar17-159", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriales bacterium" ], "sample_taxid": [ "2021391" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.482 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.99, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1677660", "Number of Sequences": "243", "Longest Sequences (bp)": "23784", "N50 (bp)": "7910", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.9", "Number of CDSs": "1199", "Average Protein Length": "337.5", "Coding Ratio (%)": "72.4", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 67.99, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002737625.1", "gtdb_species": "s__UBA955 sp002737625", "ani": 97.7877, "matched_fragments": 293, "total_fragments": 454, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__NS11-12g;f__UBA955;g__UBA955", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.69", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_903959115.1", "gtdb_species": "s__UBA955 sp903959115", "ani": 86.5777, "matched_fragments": 325, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.27", "min_intra_species_ani": "95.94", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.76", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.337, "cell_length": 0.308, "doubling_h": 1.285, "growth_tmp": 26.455, "optimum_tmp": 26.685, "optimum_ph": 7.271, "genome_size": 3861663.667, "gc_content": 35.517, "coding_genes": 2961.142, "rRNA16S_genes": 3.684, "tRNA_genes": 48.763, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.372, "range_salinity": 0.615, "facultative_respiration": 0.042, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.945, "mesophilic_range_tmp": 0.898, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.101, "bacillus_cell_shape": 0.982, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.002, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__NS11-12g", "f__UBA955", "g__UBA955", "s__UBA955 sp002737625" ], "_genome_taxon": [ "Flavobacteriales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__NS11-12g", "f__UBA955", "g__UBA955", "s__UBA955 sp002737625", "Bacteria", "Bacteroidota", "Bacteroidia", "NS11-12g", "UBA955", "UBA955", "UBA955", "sp002737625" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }