{ "type": "genome", "identifier": "GCA_947500895.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947500895.1", "bioproject": "PRJEB35770", "biosample": "SAMEA112176617", "wgs_master": "CANMUZ000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "ZE-Oct18-112", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/04", "asm_name": "ZE-Oct18-112", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/500/895/GCA_947500895.1_ZE-Oct18-112", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-04", "dateModified": "2022-12-04", "datePublished": "2022-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetota bacterium" ], "sample_taxid": [ "2900548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.613 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2223032", "Number of Sequences": "292", "Longest Sequences (bp)": "35517", "N50 (bp)": "9435", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "1910", "Average Protein Length": "304.8", "Coding Ratio (%)": "78.6", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 77.4644, "matched_fragments": 118, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter deserti", "strain": "strain=E257", "accession": "GCA_011250635.1", "taxid": 2714956, "species_taxid": 2714956, "relation_to_type": "type", "validated": true, "ani": 77.4018, "matched_fragments": 118, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides seonyuensis", "strain": "strain=MMS17-SY207-3", "accession": "GCA_004683965.1", "taxid": 2518371, "species_taxid": 2518371, "relation_to_type": "type", "validated": true, "ani": 77.3268, "matched_fragments": 104, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 77.2174, "matched_fragments": 94, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 77.2159, "matched_fragments": 107, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 77.0905, "matched_fragments": 126, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 77.0368, "matched_fragments": 123, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 77.0078, "matched_fragments": 125, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hiroshimensis", "strain": "strain=JCM 4586", "accession": "GCA_014650335.1", "taxid": 66424, "species_taxid": 66424, "relation_to_type": "type", "validated": true, "ani": 76.9628, "matched_fragments": 111, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 76.961, "matched_fragments": 117, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mashuensis", "strain": "strain=JCM 4059", "accession": "GCA_014654785.1", "taxid": 33904, "species_taxid": 33904, "relation_to_type": "type", "validated": true, "ani": 76.9067, "matched_fragments": 116, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea lactucae", "strain": "strain=NEAU-YG30", "accession": "GCA_003313395.1", "taxid": 2249762, "species_taxid": 2249762, "relation_to_type": "type", "validated": true, "ani": 76.718, "matched_fragments": 125, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.7166, "matched_fragments": 105, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nigra", "strain": "strain=452", "accession": "GCA_003074055.1", "taxid": 1827580, "species_taxid": 1827580, "relation_to_type": "type", "validated": true, "ani": 76.7017, "matched_fragments": 114, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea muscovyensis", "strain": "strain=DSM 45913", "accession": "GCA_014207745.1", "taxid": 1124761, "species_taxid": 1124761, "relation_to_type": "type", "validated": true, "ani": 76.6775, "matched_fragments": 137, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneochromogenes", "strain": "strain=MK-45", "accession": "GCA_003963535.1", "taxid": 2496836, "species_taxid": 2496836, "relation_to_type": "type", "validated": true, "ani": 76.6676, "matched_fragments": 117, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella gansuensis", "strain": "strain=DSM 44835", "accession": "GCA_000515395.1", "taxid": 281473, "species_taxid": 281473, "relation_to_type": "type", "validated": true, "ani": 76.6516, "matched_fragments": 93, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 76.5608, "matched_fragments": 105, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces humidus", "strain": "strain=JCM 4386", "accession": "GCA_014649655.1", "taxid": 52259, "species_taxid": 52259, "relation_to_type": "type", "validated": true, "ani": 76.5458, "matched_fragments": 125, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 76.5422, "matched_fragments": 93, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 76.5242, "matched_fragments": 114, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola jiangsuensis", "strain": "strain=DSM 21863", "accession": "GCA_002563715.1", "taxid": 548579, "species_taxid": 548579, "relation_to_type": "type", "validated": true, "ani": 76.4845, "matched_fragments": 88, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 76.4816, "matched_fragments": 125, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 76.4676, "matched_fragments": 83, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903954205.1", "gtdb_species": "s__Mxb001 sp903954205", "ani": 97.852, "matched_fragments": 406, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.70", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCA_016870425.1", "gtdb_species": "s__Mxb001 sp016870425", "ani": 81.7746, "matched_fragments": 390, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004379115.1", "gtdb_species": "s__Mxb001 sp004379115", "ani": 79.9104, "matched_fragments": 301, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903848435.1", "gtdb_species": "s__Mxb001 sp903848435", "ani": 79.6633, "matched_fragments": 214, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.74", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016870515.1", "gtdb_species": "s__Mxb001 sp016870515", "ani": 79.6613, "matched_fragments": 303, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903909555.1", "gtdb_species": "s__Mxb001 sp903909555", "ani": 79.0406, "matched_fragments": 276, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__Mxb001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903934925.1", "gtdb_species": "s__UBA10649 sp903934925", "ani": 78.1067, "matched_fragments": 137, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016717115.1", "gtdb_species": "s__UBA10649 sp016717115", "ani": 78.0273, "matched_fragments": 159, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017856385.1", "gtdb_species": "s__UBA10649 sp017856385", "ani": 77.5778, "matched_fragments": 162, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__S36-B12;g__UBA10649", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017916455.1", "gtdb_species": "s__Nocardioides sp017916455", "ani": 77.1443, "matched_fragments": 99, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.92", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015390235.1", "gtdb_species": "s__Quadrisphaera sp015390235", "ani": 76.7124, "matched_fragments": 103, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Quadrisphaeraceae;g__Quadrisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__S36-B12", "f__S36-B12", "g__Mxb001", "s__Mxb001 sp903954205" ], "_genome_taxon": [ "Actinomycetota", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__S36-B12", "f__S36-B12", "g__Mxb001", "s__Mxb001 sp903954205", "Bacteria", "Actinomycetota", "Actinomycetes", "S36-B12", "S36-B12", "Mxb001", "Mxb001", "sp903954205" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }