{ "type": "genome", "identifier": "GCA_947574195.1", "organism": "Desulfovibrio piger", "title": "Desulfovibrio piger", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947574195.1", "bioproject": "PRJEB57835", "biosample": "SAMEA112234092", "wgs_master": "CANPJL000000000.1", "refseq_category": "na", "taxid": "901", "species_taxid": "901", "organism_name": "Desulfovibrio piger", "infraspecific_name": "", "isolate": "SRR15730541_bin.5_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/16", "asm_name": "SRR15730541_bin.5_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/574/195/GCA_947574195.1_SRR15730541_bin.5_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-16", "dateModified": "2022-12-16", "datePublished": "2022-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio piger" ], "sample_taxid": [ "901" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.23, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2399508", "Number of Sequences": "233", "Longest Sequences (bp)": "58919", "N50 (bp)": "14199", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "1969", "Average Protein Length": "317.4", "Coding Ratio (%)": "78.1", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 95.4101, "matched_fragments": 632, "total_fragments": 688, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 80.1349, "matched_fragments": 336, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio legallii", "strain": "strain=H1T", "accession": "GCA_004309735.1", "taxid": 571438, "species_taxid": 571438, "relation_to_type": "type", "validated": true, "ani": 79.0423, "matched_fragments": 265, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 78.4592, "matched_fragments": 182, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio intestinalis", "strain": "strain=DSM 11275", "accession": "GCA_014202345.1", "taxid": 58621, "species_taxid": 58621, "relation_to_type": "type", "validated": true, "ani": 78.2066, "matched_fragments": 198, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 77.7512, "matched_fragments": 145, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.693, "matched_fragments": 138, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=DSM 1382", "accession": "GCA_000429285.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 77.1442, "matched_fragments": 118, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium apsheronum", "strain": "strain=DSM 5918", "accession": "GCA_900114115.1", "taxid": 52560, "species_taxid": 52560, "relation_to_type": "type", "validated": true, "ani": 76.7525, "matched_fragments": 82, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum lacustre", "strain": "strain=DSM 10312", "accession": "GCA_000519265.1", "taxid": 66849, "species_taxid": 66849, "relation_to_type": "type", "validated": true, "ani": 75.9386, "matched_fragments": 57, "total_fragments": 688, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.23, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_012843875.1", "gtdb_species": "s__Desulfovibrio sp900556755", "ani": 98.4777, "matched_fragments": 611, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 10, "status": "inconclusive" }, { "accession": "GCF_000156375.1", "gtdb_species": "s__Desulfovibrio piger", "ani": 95.4101, "matched_fragments": 632, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "inconclusive" }, { "accession": "GCF_900116045.1", "gtdb_species": "s__Desulfovibrio piger_A", "ani": 93.8981, "matched_fragments": 603, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019118745.1", "gtdb_species": "s__Desulfovibrio gallistercoris", "ani": 80.8884, "matched_fragments": 361, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009696265.1", "gtdb_species": "s__Desulfovibrio porci", "ani": 80.1446, "matched_fragments": 335, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.64", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019118345.1", "gtdb_species": "s__Desulfovibrio intestinavium", "ani": 79.9862, "matched_fragments": 341, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001553605.1", "gtdb_species": "s__Desulfovibrio fairfieldensis", "ani": 79.8152, "matched_fragments": 350, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, 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"-" }, { "accession": "GCF_004801255.1", "gtdb_species": "s__Desulfovibrio desulfuricans_C", "ani": 78.9317, "matched_fragments": 253, "total_fragments": 688, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.259, "cell_length": 0.375, "doubling_h": 1.142, "growth_tmp": 37.0, "optimum_tmp": 33.065, "optimum_ph": 7.283, "genome_size": 2811272.4, "gc_content": 63.65, "coding_genes": 2420.333, "rRNA16S_genes": 7.0, "tRNA_genes": 76.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, 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