# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_5	LOCUS_00040	sequence01:3506..4060(-)	frameshift		4109	WP_010966455.1	proline--tRNA ligase	97.8	31.6	47.2
MGA_6	LOCUS_00050	sequence01:4104..5195(-)	frameshift		4109	WP_010966455.1	proline--tRNA ligase	99.7	63.9	45.6
MGA_7	LOCUS_00060	sequence01:5241..6437(-)	partial			WP_001297420.1	glycoside hydrolase family 25 protein	47.7	68.8	30.4
MGA_13	LOCUS_00120	sequence01:10080..10373(+)	frameshift		10310	WP_002355668.1	TIGR01212 family radical SAM protein	90.7	28.9	40.9
MGA_14	LOCUS_00130	sequence01:10673..10999(+)	partial			WP_010989775.1	TIGR01212 family radical SAM protein	99.1	33.3	42.1
MGA_34	LOCUS_00330	sequence01:33161..33610(+)	partial			WP_002399599.1	helix-turn-helix transcriptional regulator	39.6	50.4	46.7
MGA_38	LOCUS_00370	sequence01:35610..36719(+)	partial			WP_011476292.1	helix-turn-helix transcriptional regulator	21.1	38.4	39.7
MGA_47	LOCUS_00450	sequence02:5237..5803(+)	partial			WP_010963525.1	TetR/AcrR family transcriptional regulator	56.4	54.1	41.5
MGA_49	LOCUS_00470	sequence02:7730..9340(-)	partial			WP_011860806.1	recombinase family protein	76.3	71.9	33.5
MGA_58	LOCUS_00560	sequence02:14396..14911(-)	partial			WP_002681579.1	putative ABC transporter permease	88.9	57.9	35.1
MGA_65	LOCUS_00630	sequence02:17696..19966(-)	partial			WP_010965270.1	type IV secretory system conjugative DNA transfer family protein	62.3	77.3	25.8
MGA_67	LOCUS_00650	sequence02:20799..23618(-)	partial			WP_003722637.1	peptidoglycan DD-metalloendopeptidase family protein	14.3	29.6	42.4
MGA_68	LOCUS_00660	sequence02:23688..25472(-)	partial			WP_011166393.1	DUF853 family protein	88.2	67.1	25.1
MGA_81	LOCUS_00790	sequence02:34544..35662(-)	partial			WP_094374099.1	ATPase, T2SS/T4P/T4SS family	83.1	69.4	29.2
MGA_95	LOCUS_00920	sequence03:7025..8152(-)	partial			WP_124794669.1	Fic/DOC family N-terminal domain-containing protein	73.9	76.0	25.6
MGA_100	LOCUS_00970	sequence03:11710..12333(+)	partial			WP_011986684.1	helix-turn-helix transcriptional regulator	30.0	40.0	64.5
MGA_109	LOCUS_01060	sequence03:22199..23212(+)	frameshift		23149	WP_009893196.1	serine racemase VanT catalytic subunit	92.3	44.0	39.3
MGA_110	LOCUS_01070	sequence03:23181..24323(+)	frameshift		23149	WP_009893196.1	serine racemase VanT catalytic subunit	99.2	52.9	45.9
MGA_116	LOCUS_01130	sequence03:29351..30280(-)	partial			WP_011986835.1	sporulation integral membrane protein YlbJ	88.0	74.5	23.3
MGA_130	LOCUS_01270	sequence04:2752..3366(-)	partial			WP_010964147.1	VanZ family protein	62.7	46.8	30.8
MGA_151	LOCUS_01480	sequence04:23448..24251(-)	partial			WP_002679552.1	DUF4097 family beta strand repeat-containing protein	68.5	60.4	26.6
MGA_154	LOCUS_01510	sequence04:25628..26080(-)	frameshift		26199	WP_002681377.1	virulence RhuM family protein	99.3	44.0	57.7
MGA_155	LOCUS_01520	sequence04:26487..26696(-)	internal_stop_codon	26703..26705(-)		WP_011962647.1	BRO family protein	98.6	24.6	45.6
MGA_156	LOCUS_01530	sequence04:26703..27323(-)	internal_stop_codon	26703..26705(-)		WP_016475763.1	BRO family protein	95.1	70.0	54.1
MGA_158	LOCUS_01550	sequence04:28708..29268(-)	partial			WP_004399387.1	LD-carboxypeptidase LdcB	97.8	67.4	43.3
MGA_171	LOCUS_01670	sequence05:2812..8049(+)	partial			WP_042338787.1	cell wall-binding repeat-containing protein	8.2	6.4	30.9
MGA_173	LOCUS_01690	sequence05:9581..9865(+)	frameshift		9853	WP_002286289.1	ABC transporter ATP-binding protein	94.7	35.9	59.6
MGA_174	LOCUS_01700	sequence05:9834..10466(+)	frameshift		9853	WP_010905758.1	ABC transporter ATP-binding protein	64.3	56.2	56.3
MGA_175	LOCUS_01710	sequence05:10496..11296(+)	partial			WP_003721622.1	ABC transporter permease	97.4	24.4	31.7
MGA_177	LOCUS_01730	sequence05:12176..13231(+)	partial			WP_003721622.1	ABC transporter permease	100.0	31.8	37.4
MGA_192	LOCUS_01870	sequence06:103..651(+)	partial			WP_002680773.1	Rpn family recombination-promoting nuclease/putative transposase	98.4	66.6	27.9
MGA_198	LOCUS_01930	sequence06:5183..5875(+)	partial			WP_015943066.1	hypothetical protein	78.7	72.2	32.2
MGA_218	LOCUS_02130	sequence06:25202..26179(+)	partial			WP_004398697.1	SpoIVB peptidase	91.4	72.8	38.7
MGA_219	LOCUS_02140	sequence06:26215..27510(-)	partial			WP_012869802.1	ATPase, T2SS/T4P/T4SS family	88.2	67.6	47.0
MGA_226	LOCUS_02200	sequence07:3972..5492(-)	partial			WP_010966273.1	methionine--tRNA ligase	93.7	73.8	60.8
MGA_238	LOCUS_02320	sequence07:15803..16216(-)	partial			WP_010963450.1	nucleoside deaminase	70.8	66.0	52.6
MGA_251	LOCUS_02450	sequence08:4938..6194(+)	partial			WP_000095595.1	class B sortase	43.5	72.4	40.9
MGA_253	LOCUS_02470	sequence08:8240..10066(+)	partial			WP_011461064.1	PAS domain S-box protein	64.6	44.5	36.5
MGA_259	LOCUS_02530	sequence08:14420..15100(+)	partial			WP_011987094.1	YdcF family protein	50.4	35.0	31.7
MGA_260	LOCUS_02540	sequence08:15134..16372(-)	partial			WP_000887601.1	CapA family protein	60.2	62.0	36.9
MGA_269	LOCUS_02630	sequence08:21312..24407(+)	partial			WP_010989462.1	class 1 internalin InlA	13.5	18.2	38.0
MGA_275	LOCUS_02670	sequence09:5072..5227(-)	partial			WP_003436320.1	anaerobic ribonucleoside triphosphate reductase	66.7	4.3	76.5
MGA_279	LOCUS_02710	sequence09:9843..10232(+)	frameshift		10148	WP_191314132.1	RNA polymerase sigma factor SigE	56.6	36.0	34.2
MGA_283	LOCUS_02750	sequence09:14701..17067(-)	partial			WP_011392018.1	helicase-exonuclease AddAB subunit AddB	41.5	31.5	20.5
MGA_288	LOCUS_02800	sequence09:19550..20656(-)	partial			WP_010946690.1	DNA recombination protein RmuC	83.7	72.6	42.5
MGA_292	LOCUS_02840	sequence09:22742..24034(+)	partial			WP_010946906.1	Dot/Icm type IV secretion system effector LidL	58.8	50.9	25.1
MGA_298	LOCUS_02900	sequence10:4510..5484(-)	partial			WP_011948155.1	DUF5050 domain-containing protein	85.2	47.7	28.7
MGA_300	LOCUS_02920	sequence10:5984..6901(+)	partial			WP_001079288.1	stage II sporulation protein SpoIIP	70.5	60.2	34.6
MGA_307	LOCUS_02990	sequence10:11015..12460(-)	partial			WP_011108570.1	UvrD-helicase domain-containing protein	66.9	38.4	38.5
MGA_314	LOCUS_03050	sequence10:17180..18604(+)	partial			WP_011948132.1	polysaccharide deacetylase family protein	40.5	70.4	40.9
MGA_320	LOCUS_03100	sequence11:629..961(-)	internal_stop_codon	986..988(-)		WP_002681769.1	virulence RhuM family protein	95.5	30.7	62.9
MGA_321	LOCUS_03110	sequence11:986..1645(-)	internal_stop_codon	986..988(-)		WP_002681769.1	virulence RhuM family protein	98.6	64.3	54.5
MGA_324	LOCUS_03140	sequence11:2634..3203(-)	partial			WP_011948617.1	Fic family protein	89.4	74.2	34.4
MGA_342	LOCUS_03320	sequence11:16795..17136(+)	partial			WP_011263025.1	rhodanese-like domain-containing protein	70.8	70.7	45.1
MGA_348	LOCUS_03370	sequence12:1974..2903(+)	partial			WP_002682348.1	NAD(P)-dependent oxidoreductase	98.4	62.5	24.8
MGA_372	LOCUS_03610	sequence13:3174..3773(+)	partial			WP_011459611.1	flavin reductase	72.4	68.5	29.1
MGA_379	LOCUS_03680	sequence13:11036..11560(+)	partial			WP_002985912.1	HD domain-containing protein	60.9	66.3	39.8
MGA_390	LOCUS_03790	sequence13:20399..21208(+)	partial			WP_010976587.1	choline binding-anchored murein hydrolase LytC	68.0	38.9	33.8
MGA_392	LOCUS_03810	sequence14:1846..4269(-)	partial			WP_011254626.1	ABC transporter ATP-binding protein/permease	28.5	29.7	44.6
MGA_398	LOCUS_03870	sequence14:13672..14940(-)	partial			WP_207280530.1	RNA polymerase sigma factor RpoD	56.6	70.8	27.5
MGA_406	LOCUS_03950	sequence14:19108..>20936(-)	partial			WP_087118642.1	primosomal protein N'	93.4	72.7	50.3
MGA_408	LOCUS_03970	sequence15:866..2026(-)	partial			WP_011101574.1	S41 family peptidase	90.4	72.8	36.2
MGA_420	LOCUS_04090	sequence15:12120..13463(-)	partial			WP_003723741.1	bifunctional tRNA lysidine(34) synthetase TilS/hypoxanthine phosphoribosyltransferase HprT	99.1	71.5	33.5
MGA_442	LOCUS_04310	sequence16:12331..12975(+)	partial			WP_001026762.1	Cu(I)-responsive transcriptional regulator	50.0	80.4	29.7
MGA_471	LOCUS_04600	sequence17:15746..15940(-)	partial			WP_011017159.1	PDDEXK nuclease domain-containing protein	81.2	15.0	51.9
MGA_472	LOCUS_04610	sequence17:16325..17287(-)	partial			WP_010964277.1	ATP-dependent chaperone ClpB	94.7	34.7	33.1
MGA_474	LOCUS_04630	sequence17:17956..18579(-)	partial			WP_007051574.1	putative ABC transporter permease	80.7	39.3	33.3
MGA_527	LOCUS_05130	sequence20:11145..12893(-)	partial			WP_010966087.1	LTA synthase family protein	65.6	62.8	25.5
MGA_532	LOCUS_05170	sequence21:1041..8276(-)	partial			WP_021391917.1	glycine rich domain-containing protein	14.4	58.6	31.3
MGA_533	LOCUS_05180	sequence21:8409..16541(-)	partial			WP_021391917.1	glycine rich domain-containing protein	14.2	63.9	27.1
MGA_539	LOCUS_05230	sequence22:5442..6143(-)	partial			WP_000767792.1	signal peptidase I	55.4	71.4	36.0
MGA_550	LOCUS_05340	sequence23:2029..2235(+)	partial			WP_000157348.1	DUF951 domain-containing protein	70.6	71.6	62.5
MGA_560	LOCUS_05440	sequence23:9592..11103(+)	partial			WP_011057988.1	M23 family metallopeptidase	24.9	27.4	40.8
MGA_589	LOCUS_05720	sequence25:1693..6573(+)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	70.7	48.4	18.2
MGA_594	LOCUS_05770	sequence25:10185..11339(+)	partial			WP_003420483.1	chromosomal replication initiator protein DnaA	62.5	53.5	44.9
MGA_596	LOCUS_05790	sequence25:11955..12272(+)	partial			WP_003641628.1	chromosomal replication initiator protein DnaA	85.7	19.8	45.6
MGA_604	LOCUS_05860	sequence26:1174..2226(+)	partial			WP_000727748.1	YidC family membrane integrase SpoIIIJ	64.6	82.7	36.1
MGA_605	LOCUS_05870	sequence26:2210..2818(+)	partial			WP_014467902.1	single-stranded DNA-binding protein	69.3	76.6	26.2
MGA_646	LOCUS_06240	sequence29:1359..2453(-)	partial			WP_011476292.1	helix-turn-helix transcriptional regulator	23.4	43.8	41.6
MGA_667	LOCUS_06440	sequence30:6548..9484(+)	partial			WP_011986503.1	M6 family metalloprotease domain-containing protein	46.0	51.6	28.9
MGA_710	LOCUS_06840	sequence33:9837..10385(-)	partial			WP_001832485.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	95.1	70.9	30.0
MGA_713	LOCUS_06870	sequence34:1318..1686(-)	partial			WP_003227448.1	spore coat protein GerQ	91.8	63.5	47.4
MGA_717	LOCUS_06910	sequence34:4288..5505(+)	partial			WP_110022974.1	M23 family metallopeptidase	29.1	38.4	36.9
MGA_730	LOCUS_07040	sequence35:2621..5035(+)	partial			WP_010905045.1	phage/plasmid primase, P4 family	41.8	60.3	23.7
MGA_734	LOCUS_07080	sequence35:6779..8377(+)	partial			WP_009889110.1	tyrosine-type recombinase/integrase	47.7	75.5	25.8
MGA_758	LOCUS_07290	sequence38:240..743(+)	partial			WP_003227654.1	stage II sporulation protein R	86.2	71.9	39.8
MGA_776	LOCUS_07470	sequence39:1067..1732(-)	partial			WP_002380173.1	HD domain-containing protein	71.5	69.6	28.9
MGA_792	LOCUS_07600	sequence41:130..843(+)	partial			WP_011476292.1	helix-turn-helix transcriptional regulator	27.4	32.0	40.0
MGA_794	LOCUS_07620	sequence41:1845..2435(+)	partial			WP_000828653.1	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	46.9	45.7	42.4
MGA_796	LOCUS_07640	sequence41:3322..4704(-)	partial			WP_005809852.1	DNA ligase D	66.5	37.4	43.5
MGA_801	LOCUS_07690	sequence41:8030..8593(-)	partial			WP_011948333.1	helix-turn-helix transcriptional regulator	36.4	53.1	52.2
MGA_808	LOCUS_07750	sequence42:3947..5620(+)	partial			WP_005091701.1	ATP-binding cassette domain-containing protein	86.2	57.1	26.8
MGA_809	LOCUS_07760	sequence42:5606..5905(-)	frameshift		5931	WP_011249520.1	DNA-binding protein	98.0	67.6	35.1
MGA_810	LOCUS_07770	sequence42:6014..6295(-)	partial			WP_003817429.1	GyrI-like domain-containing protein	75.3	32.4	54.3
MGA_811	LOCUS_07780	sequence42:6264..6422(-)	partial			WP_003817429.1	GyrI-like domain-containing protein	100.0	24.1	59.6
MGA_838	LOCUS_08010	sequence45:1747..2571(+)	frameshift		2556	WP_046082755.1	reverse transcriptase family protein	93.8	80.9	42.9
MGA_842	LOCUS_08050	sequence45:7739..8383(+)	partial			WP_008765521.1	RluA family pseudouridine synthase	94.4	67.3	40.1
MGA_844	LOCUS_08070	sequence46:1477..3225(+)	partial			WP_010980185.1	DNA double-strand break repair helicase HerA	49.3	63.4	27.3
MGA_850	LOCUS_08130	sequence47:5158..5709(-)	partial			WP_167939813.1	virulence RhuM family protein	78.7	43.1	51.0
MGA_858	LOCUS_08190	sequence48:2088..3686(+)	partial			WP_011202294.1	site-specific DNA-methyltransferase	81.8	73.6	40.8
MGA_875	LOCUS_08340	sequence50:2263..3654(-)	partial			WP_035213450.1	helix-turn-helix transcriptional regulator	16.0	57.3	56.0
MGA_887	LOCUS_08440	sequence53:3456..3884(-)	partial			WP_000267001.1	large-conductance mechanosensitive channel protein MscL	66.9	72.0	65.3
MGA_889	LOCUS_08460	sequence53:5880..6764(-)	partial			WP_011166730.1	ribosome biogenesis GTPase YqeH	66.3	58.6	32.6
MGA_901	LOCUS_08560	sequence55:127..576(-)	partial			WP_012546752.1	C40 family peptidase	57.0	29.5	35.5
MGA_916	LOCUS_08690	sequence56:2525..2935(+)	partial			WP_000119129.1	cell division protein SepF	63.2	55.1	58.1
MGA_920	LOCUS_08730	sequence56:5668..5988(+)	frameshift,internal_stop_codon	5638..5640(+)	5916	WP_102407668.1	KilA-N domain-containing protein	71.7	27.1	48.7
MGA_921	LOCUS_08740	sequence56:5976..6248(+)	partial			WP_010963856.1	MBL fold metallo-hydrolase	97.8	32.8	65.9
MGA_926	LOCUS_08780	sequence57:671..901(+)	partial			WP_010964521.1	DUF1653 domain-containing protein	96.1	43.9	51.3
MGA_933	LOCUS_08840	sequence58:31..678(+)	partial			WP_011013327.1	ATP-binding protein	54.0	22.2	26.4
MGA_944	LOCUS_08950	sequence59:5194..6300(+)	partial			WP_010989403.1	serine protease HtrA	87.0	66.8	38.9
MGA_962	LOCUS_09110	sequence61:4967..6178(-)	partial			WP_003702157.1	replicative DNA helicase	62.3	56.4	30.3
MGA_979	LOCUS_09270	sequence63:5380..>6152(-)	partial			WP_000031450.1	NAD-dependent DNA ligase LigA	99.2	38.3	48.8
MGA_984	LOCUS_09310	sequence64:4204..5811(-)	partial			WP_000095595.1	class B sortase	36.1	76.0	35.2
MGA_990	LOCUS_09360	sequence66:55..1215(-)	frameshift		1454	WP_000670379.1	ribonuclease J1	98.4	68.5	45.9
MGA_991	LOCUS_09370	sequence66:1425..1715(-)	frameshift		1466	WP_011674459.1	ribonuclease J	83.3	14.3	70.0
MGA_999	LOCUS_09430	sequence67:3055..4080(-)	partial			WP_002678974.1	SLBB domain-containing protein	81.5	65.9	20.7
MGA_1023	LOCUS_09610	sequence71:225..1007(+)	partial			WP_010880953.1	replicative DNA helicase	96.5	57.1	28.1
MGA_1024	LOCUS_09620	sequence71:1139..2203(+)	partial			WP_011038710.1	reverse transcriptase domain-containing protein	66.9	42.2	42.0
MGA_1025	LOCUS_09630	sequence71:2467..3447(+)	partial			WP_031296849.1	PolC-type DNA polymerase III	35.0	6.5	36.0
MGA_1026	LOCUS_09640	sequence71:3685..4101(+)	partial			WP_010874589.1	replicative DNA helicase	94.2	27.7	30.8
MGA_1044	LOCUS_09800	sequence75:2843..>3573(-)	partial			WP_011460782.1	FkbM family methyltransferase	76.4	50.5	32.1
MGA_1055	LOCUS_09860	sequence78:992..1285(+)	partial			WP_003574160.1	YutD family protein	87.6	39.7	36.5
MGA_1062	LOCUS_09910	sequence79:2719..3069(+)	partial			WP_164919770.1	YigZ family protein	98.3	61.8	47.0
MGA_1066	LOCUS_09930	sequence80:1103..3052(-)	partial			WP_011119870.1	choice-of-anchor Q domain-containing protein	67.3	14.8	23.5
MGA_1085	LOCUS_10100	sequence84:1044..2666(-)	partial			WP_009659870.1	YfcC family protein	35.7	41.4	26.9