# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_19	LOCUS_00190	sequence01:20044..20214(+)	frameshift		20184,20299	WP_003232772.1	multidrug resistance efflux transporter family protein	80.4	13.9	68.9
MGA_20	LOCUS_00200	sequence01:20454..20777(+)	frameshift		20512,20299,20680	WP_000644594.1	multidrug resistance efflux transporter family protein	54.2	18.6	39.7
MGA_21	LOCUS_00210	sequence01:20735..21052(+)	frameshift		20679,20511	WP_003232772.1	multidrug resistance efflux transporter family protein	81.0	26.2	45.9
MGA_96	LOCUS_00960	sequence01:101056..101811(-)	partial			WP_011861991.1	ATP-binding cassette domain-containing protein	91.2	69.8	50.6
MGA_140	LOCUS_01400	sequence01:154866..156089(-)	partial			WP_124797038.1	putative glycoside hydrolase	84.5	72.6	36.9
MGA_153	LOCUS_01530	sequence01:168633..169574(-)	partial			WP_010886457.1	mechanosensitive ion channel	98.7	56.0	24.9
MGA_165	LOCUS_01650	sequence01:179316..180257(+)	partial			WP_003404247.1	DsbA family protein	58.1	81.9	29.7
MGA_167	LOCUS_01670	sequence01:180989..>181504(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	83.0	17.3	25.7
MGA_171	LOCUS_01700	sequence02:3541..4176(-)	frameshift		4241	WP_010974862.1	N-acyl homoserine lactonase AiiB	100.0	76.4	39.8
MGA_175	LOCUS_01740	sequence02:7304..7681(-)	partial			WP_011392911.1	sugar phosphate isomerase/epimerase	80.8	36.9	36.3
MGA_205	LOCUS_02040	sequence02:45132..45269(+)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_270	LOCUS_02690	sequence02:120709..120984(+)	frameshift		120909	WP_000072995.1	GNAT family N-acetyltransferase	90.1	64.4	41.7
MGA_361	LOCUS_03580	sequence03:45782..46672(-)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	99.7	63.5	57.3
MGA_397	LOCUS_03940	sequence03:85788..86150(-)	partial			WP_001830560.1	MepB family protein	97.5	70.9	49.6
MGA_422	LOCUS_04190	sequence03:110570..111340(-)	frameshift		111342	WP_000819684.1	spermidine/putrescine ABC transporter substrate-binding protein	99.6	71.4	69.4
MGA_423	LOCUS_04200	sequence03:111325..111636(-)	frameshift		111342	WP_000819684.1	spermidine/putrescine ABC transporter substrate-binding protein	95.1	27.5	78.6
MGA_424	LOCUS_04210	sequence03:111788..112438(-)	frameshift,internal_stop_codon	111691..111693(-)	112377,111828	WP_103388157.1	ABC transporter permease	87.5	71.3	73.5
MGA_426	LOCUS_04230	sequence03:113239..113892(-)	frameshift		113921	WP_001831686.1	ABC transporter ATP-binding protein	99.1	59.1	80.5
MGA_427	LOCUS_04240	sequence03:113892..114338(-)	frameshift		113921	WP_001831686.1	ABC transporter ATP-binding protein	93.9	38.2	70.5
MGA_471	LOCUS_04660	sequence04:3369..3590(-)	frameshift		3809,3572	WP_003721931.1	osmoprotectant ABC transporter substrate-binding protein	94.5	22.4	62.3
MGA_472	LOCUS_04670	sequence04:3565..3699(-)	frameshift		3809,3572	WP_002470137.1	osmoprotectant ABC transporter substrate-binding protein	95.5	13.4	76.2
MGA_473	LOCUS_04680	sequence04:3807..4001(-)	frameshift,internal_stop_codon	4062..4064(-)	3572,3815	WP_001830497.1	osmoprotectant ABC transporter substrate-binding protein	100.0	20.1	57.8
MGA_474	LOCUS_04690	sequence04:4062..4229(-)	frameshift,internal_stop_codon	4062..4064(-)	3815	WP_000721551.1	osmoprotectant ABC transporter substrate-binding protein	100.0	17.6	52.7
MGA_576	LOCUS_05690	sequence05:456..659(-)	frameshift,internal_stop_codon	688..690(-)	458,627	WP_003245605.1	SDR family oxidoreductase	92.5	22.3	46.8
MGA_648	LOCUS_06410	sequence05:84003..84434(-)	frameshift		84450	WP_011202272.1	AbgT family transporter	90.9	24.5	43.1
MGA_649	LOCUS_06420	sequence05:84415..85398(-)	frameshift		84450	WP_009889640.1	YfcC family protein	94.8	67.2	35.3
MGA_657	LOCUS_06500	sequence05:94727..95881(-)	frameshift		94729	WP_002382276.1	hydroxymethylglutaryl-CoA reductase, degradative	99.2	47.9	54.1
MGA_662	LOCUS_06550	sequence05:101876..102298(-)	partial			WP_002855690.1	alpha/beta hydrolase	84.3	38.3	35.6
MGA_671	LOCUS_06640	sequence05:114287..114724(-)	partial			WP_002456715.1	DUF4064 domain-containing protein	91.7	65.3	29.0
MGA_702	LOCUS_06950	sequence06:27926..28297(+)	partial			WP_011087977.1	Hsp20/alpha crystallin family protein	75.6	55.8	33.3
MGA_708	LOCUS_07010	sequence06:32819..33343(-)	frameshift		33366	WP_000934155.1	respiratory nitrate reductase subunit gamma	100.0	77.3	75.9
MGA_709	LOCUS_07020	sequence06:33358..33495(-)	frameshift		33366	WP_002438321.1	respiratory nitrate reductase subunit gamma	95.6	19.1	79.1
MGA_720	LOCUS_07130	sequence06:46616..46771(+)	partial			WP_000164003.1	6-phospho-beta-glucosidase	80.4	8.6	82.9
MGA_740	LOCUS_07330	sequence06:63618..64229(+)	frameshift		64196,63559	WP_001832893.1	membrane protein insertase YidC	95.1	69.4	64.2
MGA_779	LOCUS_07720	sequence06:105002..105631(+)	frameshift,internal_stop_codon	105000..105002(+)	104990	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	97.6	44.2	69.6
MGA_791	LOCUS_07820	sequence07:3182..3358(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	95.3
MGA_862	LOCUS_08530	sequence07:74562..74720(-)	partial			WP_001830756.1	hypothetical protein	65.4	73.9	76.5
MGA_864	LOCUS_08550	sequence07:75394..75573(+)	partial			WP_001830753.1	hypothetical protein	71.2	71.2	66.7
MGA_869	LOCUS_08600	sequence07:77625..78044(-)	frameshift		77635,78091	WP_012775607.1	nucleotidyltransferase domain-containing protein	97.1	46.7	51.9
MGA_870	LOCUS_08610	sequence07:78086..78304(-)	frameshift		78091	WP_000228166.1	nucleotidyltransferase domain-containing protein	94.4	23.2	52.9
MGA_876	LOCUS_08670	sequence07:83278..83577(-)	partial			WP_002440170.1	A24 family peptidase	86.9	36.4	33.7
MGA_962	LOCUS_09530	sequence08:79880..80155(+)	partial			WP_001829589.1	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	100.0	68.9	78.0
MGA_972	LOCUS_09630	sequence08:90047..90436(-)	frameshift,internal_stop_codon	90047..90049(-)	89959	WP_001829625.1	GrpB family protein	100.0	73.7	60.5
MGA_996	LOCUS_09850	sequence09:19979..20242(-)	frameshift		20391	WP_001830914.1	LysE family translocator	96.6	40.5	43.5
MGA_999	LOCUS_09880	sequence09:21856..22536(+)	partial			WP_203873878.1	alpha/beta hydrolase fold domain-containing protein	68.1	40.9	29.8
MGA_1024	LOCUS_10130	sequence09:40787..40993(+)	partial			WP_001548522.1	TM2 domain-containing protein	94.1	69.6	76.6
MGA_1058	LOCUS_10470	sequence09:70403..70549(+)	partial			WP_000837752.1	teichoic acid D-Ala incorporation-associated protein DltX	77.1	74.0	70.3
MGA_1166	LOCUS_11520	sequence11:1..566(+)	partial			WP_000678232.1	SDR family oxidoreductase	95.7	71.3	59.2
MGA_1254	LOCUS_12400	sequence12:9324..9743(-)	partial			WP_000932694.1	single-stranded DNA-binding protein	74.8	79.4	72.1
MGA_1285	LOCUS_12710	sequence12:37847..38404(-)	partial			WP_000701483.1	DNA-directed RNA polymerase subunit delta	69.7	73.3	77.5
MGA_1312	LOCUS_12980	sequence12:63650..63790(-)	frameshift,internal_stop_codon	63593..63595(-)	63655	WP_005816008.1	DUF2200 domain-containing protein	100.0	39.7	56.5
MGA_1314	LOCUS_13000	sequence12:66508..66834(+)	frameshift		66813	WP_000083807.1	PTS mannitol transporter subunit IICB	91.7	19.3	77.8
MGA_1315	LOCUS_13010	sequence12:66816..68033(+)	frameshift		66813	WP_000083807.1	PTS mannitol transporter subunit IICB	99.8	79.9	78.5
MGA_1323	LOCUS_13090	sequence13:1..1656(+)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	94.2	17.6	30.5
MGA_1347	LOCUS_13330	sequence13:33265..35067(+)	partial			WP_011015494.1	metallophosphoesterase family protein	73.0	65.9	26.0
MGA_1374	LOCUS_13600	sequence13:62557..63126(+)	partial			WP_011141158.1	sigma-70 family RNA polymerase sigma factor	83.6	71.2	36.4
MGA_1445	LOCUS_14280	sequence15:1580..1774(-)	partial			WP_000205106.1	YolD-like family protein	45.3	21.8	72.4
MGA_1488	LOCUS_14710	sequence15:46352..46735(-)	frameshift		46776	WP_001089621.1	radical SAM/CxCxxxxC motif protein YfkAB	96.1	31.9	73.0
MGA_1489	LOCUS_14720	sequence15:46759..47511(-)	frameshift		46782	WP_001830386.1	radical SAM/CxCxxxxC motif protein YfkAB	93.6	61.6	82.5
MGA_1531	LOCUS_15140	sequence16:22198..22641(+)	internal_stop_codon	22156..22158(+),22177..22179(+),22195..22197(+),22150..22152(+)		WP_002440043.1	competence type IV pilus minor pilin ComGF	94.6	83.4	36.7
MGA_1644	LOCUS_16240	sequence18:18979..19401(+)	partial			WP_004254740.1	carboxymuconolactone decarboxylase family protein	70.7	82.0	47.0
MGA_1662	LOCUS_16420	sequence18:43953..44774(+)	partial			WP_002485463.1	poly-gamma-glutamate hydrolase family protein	75.5	46.3	44.2
MGA_1694	LOCUS_16730	sequence19:19345..19548(-)	frameshift		19350	WP_000792342.1	BCCT family transporter	88.1	11.3	78.0
MGA_1698	LOCUS_16770	sequence19:24142..24621(-)	internal_stop_codon	24814..24816(-),24643..24645(-)		WP_011948711.1	cytochrome P450	98.1	37.2	45.5
MGA_1699	LOCUS_16780	sequence19:24814..25389(-)	internal_stop_codon	24814..24816(-),24643..24645(-)		WP_011948711.1	cytochrome P450	97.9	44.6	40.1
MGA_1700	LOCUS_16790	sequence19:25697..26404(+)	partial			WP_003438605.1	peroxiredoxin	93.2	31.7	42.2
MGA_1732	LOCUS_17100	sequence20:1958..2542(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	68.0	74.9	33.3
MGA_1736	LOCUS_17140	sequence20:5899..8415(-)	partial			WP_010905630.1	CDP-glycerol glycerophosphotransferase family protein	73.3	76.2	35.5
MGA_1738	LOCUS_17160	sequence20:9615..10814(-)	partial			WP_002386255.1	DUF1958 domain-containing protein	89.5	72.6	38.4
MGA_1794	LOCUS_17720	sequence21:16653..17510(-)	partial			WP_000170400.1	staphyloferrin A export MFS transporter	97.9	70.5	58.6
MGA_1940	LOCUS_19170	sequence23:44199..45332(-)	partial			WP_010990014.1	autolysin Ami	62.9	26.0	44.7
MGA_1970	LOCUS_19470	sequence24:29450..31210(+)	frameshift		31195	WP_010706747.1	DUF1116 domain-containing protein	99.1	57.9	49.7
MGA_1971	LOCUS_19480	sequence24:31212..32477(+)	frameshift		31195	WP_010706747.1	DUF1116 domain-containing protein	98.1	41.4	67.8
MGA_2004	LOCUS_19800	sequence25:30477..31043(+)	partial			WP_002485473.1	zinc ribbon domain-containing protein	78.7	58.2	31.8
MGA_2007	LOCUS_19830	sequence25:32622..33683(+)	internal_stop_codon	33681..33683(+)		WP_003244379.1	ribose ABC transporter ATP-binding protein RbsA	99.4	71.2	54.8
MGA_2008	LOCUS_19840	sequence25:33723..34112(+)	internal_stop_codon	33681..33683(+)		WP_010906071.1	sugar ABC transporter ATP-binding protein	91.5	24.2	67.2
MGA_2146	LOCUS_21190	sequence29:22224..23657(+)	partial			WP_000883425.1	YhgE/Pip domain-containing protein	55.6	34.3	29.9
MGA_2149	LOCUS_21220	sequence29:24884..25705(-)	partial			WP_012583944.1	AraC family transcriptional regulator	60.1	59.6	28.2
MGA_2156	LOCUS_21280	sequence30:1..1404(+)	partial			WP_002437845.1	YSIRK domain-containing triacylglycerol lipase GehC	98.9	67.6	64.8
MGA_2164	LOCUS_21360	sequence30:10430..11020(+)	partial			WP_003641231.1	phosphatase PAP2 family protein	61.7	60.5	31.6
MGA_2186	LOCUS_21570	sequence31:2065..2265(-)	frameshift		2333	WP_003234254.1	MBL fold metallo-hydrolase	97.0	25.2	56.2
MGA_2187	LOCUS_21580	sequence31:2319..2582(-)	frameshift		2333	WP_001026122.1	MBL fold metallo-hydrolase	96.6	32.9	59.5
MGA_2224	LOCUS_21940	sequence32:7807..9390(+)	frameshift		9372	WP_011117524.1	P-loop NTPase fold protein	99.2	84.1	57.6
MGA_2226	LOCUS_21960	sequence32:9921..10136(+)	frameshift		9823	WP_000832687.1	IS3 family transposase	100.0	25.1	70.4
MGA_2336	LOCUS_23040	sequence36:13309..13536(-)	frameshift,internal_stop_codon	13588..13590(-),13654..13656(-),13597..13599(-)	13371	WP_000894660.1	formate C-acetyltransferase	73.3	7.3	78.2
MGA_2347	LOCUS_23140	sequence37:2267..3019(+)	partial			WP_000827010.1	hypothetical protein	56.8	73.5	45.3
MGA_2430	LOCUS_23950	sequence41:11729..11953(+)	partial			WP_011104332.1	MmcQ/YjbR family DNA-binding protein	98.6	62.4	49.3
MGA_2450	LOCUS_24150	sequence42:13471..>16756(-)	partial			WP_001074534.1	glucosaminidase domain-containing protein	75.5	68.1	41.4
MGA_2470	LOCUS_24340	sequence44:1..603(+)	partial			WP_000866737.1	glycerate kinase	99.0	52.9	73.2
MGA_2508	LOCUS_24710	sequence46:9462..9749(-)	frameshift		9493,9829	WP_010989581.1	GNAT family N-acetyltransferase	100.0	60.1	56.4
MGA_2511	LOCUS_24740	sequence46:11706..11855(-)	frameshift,internal_stop_codon	11868..11870(-),12039..12041(-)	11852,11813	WP_001832700.1	IS200/IS605-like element ISSep3 family transposase	71.4	21.9	60.0
MGA_2512	LOCUS_24750	sequence46:11868..12038(-)	frameshift,internal_stop_codon	11868..11870(-),12039..12041(-)	11852,11813	WP_000093392.1	IS200/IS605 family transposase	100.0	34.8	87.5
MGA_2513	LOCUS_24760	sequence46:12039..12170(-)	frameshift,internal_stop_codon	11868..11870(-),12039..12041(-)	11852,11813	WP_001832700.1	IS200/IS605-like element ISSep3 family transposase	100.0	26.9	79.1
MGA_2515	LOCUS_24780	sequence46:13264..>13952(-)	partial			WP_001829500.1	homoserine kinase	98.7	73.5	70.7
MGA_2517	LOCUS_24790	sequence47:4395..4937(-)	frameshift		4418	WP_000610259.1	MSCRAMM family adhesin SdrE	92.2	16.7	33.5
MGA_2549	LOCUS_25070	sequence49:9855..10208(+)	frameshift		10199,9871	WP_000106332.1	MutS family DNA mismatch repair protein	93.2	20.3	51.4
MGA_2550	LOCUS_25080	sequence49:10205..11305(+)	frameshift		10196	WP_001832478.1	AAA family ATPase	97.5	66.9	58.9
MGA_2554	LOCUS_25110	sequence50:296..1105(-)	frameshift		301	WP_095092556.1	IS1182 family transposase	94.1	45.1	84.2
MGA_2555	LOCUS_25120	sequence50:1278..1613(-)	frameshift,internal_stop_codon	1784..1786(-)	1081,1291,1654	WP_001832263.1	NtaA/DmoA family FMN-dependent monooxygenase	96.4	24.7	64.5
MGA_2569	LOCUS_25260	sequence51:8439..9644(-)	internal_stop_codon	9645..9647(-)		WP_000402171.1	sodium:proton antiporter	99.3	59.9	43.8
MGA_2570	LOCUS_25270	sequence51:9645..10457(-)	internal_stop_codon	9645..9647(-)		WP_001832160.1	sodium:proton antiporter	100.0	39.6	64.8
MGA_2581	LOCUS_25370	sequence52:8240..8656(-)	partial			WP_075141044.1	replication initiator protein A	100.0	44.2	83.3
MGA_2635	LOCUS_25830	sequence60:2543..3187(-)	partial			WP_011948563.1	YafY family protein	93.5	60.0	23.5
MGA_2639	LOCUS_25850	sequence61:1676..2881(-)	partial			WP_011104962.1	SIR2 family protein	63.6	83.1	28.3