{
    "type": "genome",
    "identifier": "GCA_947643975.1",
    "organism": "Staphylococcus cohnii",
    "title": "Staphylococcus cohnii",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947643975.1",
        "bioproject": "PRJEB57940",
        "biosample": "SAMEA112247689",
        "wgs_master": "CANRXP000000000.1",
        "refseq_category": "na",
        "taxid": "29382",
        "species_taxid": "29382",
        "organism_name": "Staphylococcus cohnii",
        "infraspecific_name": "",
        "isolate": "SRR17794290_bin.17_metawrap_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/21",
        "asm_name": "SRR17794290_bin.17_metawrap_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/643/975/GCA_947643975.1_SRR17794290_bin.17_metawrap_v1.3_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-21",
    "dateModified": "2022-12-21",
    "datePublished": "2022-12-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus cohnii"
        ],
        "sample_taxid": [
            "29382"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2720809",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "181504",
        "N50 (bp)": "77235",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.0",
        "Number of CDSs": "2574",
        "Average Protein Length": "289.8",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Staphylococcus nepalensis",
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                "accession": "GCA_900458695.1",
                "taxid": 214473,
                "species_taxid": 214473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.5819,
                "matched_fragments": 858,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus nepalensis",
                "strain": "strain=CCM 7045",
                "accession": "GCA_014635045.1",
                "taxid": 214473,
                "species_taxid": 214473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.5765,
                "matched_fragments": 857,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus nepalensis",
                "strain": "strain=DSM 15150",
                "accession": "GCA_002902745.1",
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                "species_taxid": 214473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.2364,
                "matched_fragments": 713,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus cohnii subsp. barensis",
                "strain": "strain=SC5",
                "accession": "GCA_014180735.1",
                "taxid": 2834574,
                "species_taxid": 29382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.461,
                "matched_fragments": 672,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus cohnii subsp. cohnii",
                "strain": "strain=NCTC 11041",
                "accession": "GCA_002902365.1",
                "taxid": 74704,
                "species_taxid": 29382,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.3498,
                "matched_fragments": 651,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus cohnii",
                "strain": "strain=NCTC11041",
                "accession": "GCA_900458255.1",
                "taxid": 29382,
                "species_taxid": 29382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.309,
                "matched_fragments": 661,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus ureilyticus",
                "strain": "strain=DSM 6718",
                "accession": "GCA_002902235.1",
                "taxid": 94138,
                "species_taxid": 94138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2406,
                "matched_fragments": 633,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus shinii",
                "strain": "strain=K22-5M",
                "accession": "GCA_017583065.1",
                "taxid": 2912228,
                "species_taxid": 2912228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.629,
                "matched_fragments": 533,
                "total_fragments": 879,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_014635045.1",
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                "matched_fragments": 857,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.27",
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                "num_clustered_genomes": 23,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002902365.1",
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                "mean_intra_species_ani": "97.14",
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                "num_clustered_genomes": 59,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "98.76",
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                "num_clustered_genomes": 107,
                "status": "-"
            },
            {
                "accession": "GCF_016774515.1",
                "gtdb_species": "s__Staphylococcus xylosus_A",
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                "total_fragments": 879,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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            },
            {
                "accession": "GCF_001747895.1",
                "gtdb_species": "s__Staphylococcus equorum_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "accession": "GCF_002732165.1",
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                "matched_fragments": 501,
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            },
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                "accession": "GCF_000010125.1",
                "gtdb_species": "s__Staphylococcus saprophyticus",
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                "accession": "GCF_013391405.1",
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            {
                "accession": "GCF_000338275.1",
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            {
                "accession": "GCF_004785665.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.041,
        "cell_length": -0.052,
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    "_gtdb_taxon": [
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        "g__Staphylococcus",
        "s__Staphylococcus nepalensis"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
        "f__Staphylococcaceae",
        "g__Staphylococcus",
        "s__Staphylococcus nepalensis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Staphylococcales",
        "Staphylococcaceae",
        "Staphylococcus",
        "Staphylococcus",
        "nepalensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}