{ "type": "genome", "identifier": "GCA_947644385.1", "organism": "uncultured Helicobacter sp.", "title": "uncultured Helicobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947644385.1", "bioproject": "PRJEB57834", "biosample": "SAMEA112247244", "wgs_master": "CANRZG000000000.1", "refseq_category": "na", "taxid": "175537", "species_taxid": "175537", "organism_name": "uncultured Helicobacter sp.", "infraspecific_name": "", "isolate": "SRR15633998_bin.24_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/21", "asm_name": "SRR15633998_bin.24_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/644/385/GCA_947644385.1_SRR15633998_bin.24_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-21", "dateModified": "2022-12-21", "datePublished": "2022-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Helicobacter sp." ], "sample_taxid": [ "175537" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.491 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1762157", "Number of Sequences": "34", "Longest Sequences (bp)": "259139", "N50 (bp)": "109253", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.9", "Number of CDSs": "1760", "Average Protein Length": "304.0", "Coding Ratio (%)": "91.1", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter rodentium", "strain": "strain=ATCC 700285", "accession": "GCA_000687535.1", "taxid": 59617, "species_taxid": 59617, "relation_to_type": "type", "validated": true, "ani": 82.3762, "matched_fragments": 435, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter turcicus", "strain": "strain=Faydin-H70", "accession": "GCA_019711685.1", "taxid": 2867412, "species_taxid": 2867412, "relation_to_type": "type", "validated": true, "ani": 78.439, "matched_fragments": 212, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter winghamensis", "strain": "strain=ATCC BAA-430", "accession": "GCA_000158455.1", "taxid": 157268, "species_taxid": 157268, "relation_to_type": "type", "validated": true, "ani": 77.9451, "matched_fragments": 217, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter pullorum", "strain": "strain=CCUG 33837", "accession": "GCA_017979475.1", "taxid": 35818, "species_taxid": 35818, "relation_to_type": "type", "validated": true, "ani": 77.4716, "matched_fragments": 155, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000155455.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.3588, "matched_fragments": 166, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter burdigaliensis", "strain": "strain=CNRCH 2005/566H", "accession": "GCA_003670295.1", "taxid": 2315334, "species_taxid": 2315334, "relation_to_type": "type", "validated": true, "ani": 77.2863, "matched_fragments": 140, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000162575.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.2641, "matched_fragments": 171, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter valdiviensis", "strain": "strain=WBE14", "accession": "GCA_003245365.1", "taxid": 1458358, "species_taxid": 1458358, "relation_to_type": "type", "validated": true, "ani": 77.1018, "matched_fragments": 140, "total_fragments": 568, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003364315.1", "gtdb_species": "s__Helicobacter_D ganmani", "ani": 99.1159, "matched_fragments": 532, "total_fragments": 568, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000687535.1", "gtdb_species": "s__Helicobacter_D rodentium", "ani": 82.386, "matched_fragments": 435, "total_fragments": 568, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000765695.2", "gtdb_species": "s__Helicobacter_D sp000765695", "ani": 78.9264, "matched_fragments": 270, "total_fragments": 568, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000158455.1", "gtdb_species": "s__Helicobacter_D winghamensis", "ani": 77.977, "matched_fragments": 215, "total_fragments": 568, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.12", 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