{ "type": "genome", "identifier": "GCA_947646065.1", "organism": "uncultured Eggerthellaceae bacterium", "title": "uncultured Eggerthellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947646065.1", "bioproject": "PRJEB57940", "biosample": "SAMEA112247501", "wgs_master": "CANSFB000000000.1", "refseq_category": "na", "taxid": "2321402", "species_taxid": "2321402", "organism_name": "uncultured Eggerthellaceae bacterium", "infraspecific_name": "", "isolate": "SRR17794260_bin.6_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/21", "asm_name": "SRR17794260_bin.6_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/646/065/GCA_947646065.1_SRR17794260_bin.6_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-21", "dateModified": "2022-12-21", "datePublished": "2022-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Eggerthellaceae bacterium" ], "sample_taxid": [ "2321402" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.561 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2016817", "Number of Sequences": "98", "Longest Sequences (bp)": "94397", "N50 (bp)": "34970", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "1654", "Average Protein Length": "345.2", "Coding Ratio (%)": "84.9", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Adlercreutzia mucosicola", "strain": "strain=DSM 19490", "accession": "GCA_024623255.1", "taxid": 580026, "species_taxid": 580026, "relation_to_type": "type", "validated": true, "ani": 78.6904, "matched_fragments": 158, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia mucosicola", "strain": "strain=DSM 19490", "accession": "GCA_000422625.1", "taxid": 580026, "species_taxid": 580026, "relation_to_type": "type", "validated": true, "ani": 78.5954, "matched_fragments": 166, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia caecimuris", "strain": "strain=DSM 21839", "accession": "GCA_024623275.1", "taxid": 671266, "species_taxid": 671266, "relation_to_type": "type", "validated": true, "ani": 78.4694, "matched_fragments": 169, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_008831045.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 78.4309, "matched_fragments": 176, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_024623245.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 78.4301, "matched_fragments": 176, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 78.3999, "matched_fragments": 199, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia caecimuris", "strain": "strain=B7", "accession": "GCA_000403355.2", "taxid": 671266, "species_taxid": 671266, "relation_to_type": "type", "validated": true, "ani": 78.264, "matched_fragments": 172, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_003726015.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 78.2403, "matched_fragments": 175, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_024171685.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 78.2215, "matched_fragments": 173, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens", "strain": "strain=DSM 19450", "accession": "GCA_000478885.1", "taxid": 2864143, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 78.1215, "matched_fragments": 180, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003725965.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 77.8979, "matched_fragments": 152, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003339815.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 77.7763, "matched_fragments": 164, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xiamenia xianingshaonis", "strain": "strain=zg-886", "accession": "GCA_017945865.1", "taxid": 2682776, "species_taxid": 2682776, "relation_to_type": "type", "validated": true, "ani": 77.7662, "matched_fragments": 117, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 77.7381, "matched_fragments": 166, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xiamenia xianingshaonis", "strain": "strain=zg-886", "accession": "GCA_011392455.1", "taxid": 2682776, "species_taxid": 2682776, "relation_to_type": "type", "validated": true, "ani": 77.722, "matched_fragments": 125, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia faecalis", "strain": "strain=KGMB04484", "accession": "GCA_004135645.1", "taxid": 2509433, "species_taxid": 2509433, "relation_to_type": "type", "validated": true, "ani": 77.2462, "matched_fragments": 132, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_910589125.1", "gtdb_species": "s__MGBC163016 sp910589125", "ani": 80.9579, "matched_fragments": 353, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910580205.1", "gtdb_species": "s__MGBC163016 sp910580205", "ani": 80.5116, "matched_fragments": 302, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910588905.1", "gtdb_species": "s__MGBC163016 sp910588905", "ani": 80.5062, "matched_fragments": 262, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910588205.1", "gtdb_species": "s__MGBC163016 sp910588205", "ani": 80.4957, "matched_fragments": 243, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910588435.1", "gtdb_species": "s__MGBC163016 sp910588435", "ani": 79.6936, "matched_fragments": 256, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910588095.1", "gtdb_species": "s__D16-63 sp910588095", "ani": 79.0837, "matched_fragments": 191, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__D16-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003612475.1", "gtdb_species": "s__D16-63 sp003612475", "ani": 78.9112, "matched_fragments": 196, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__D16-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009911695.1", "gtdb_species": "s__QWKK01 sp009911695", "ani": 78.8564, "matched_fragments": 188, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011038975.1", "gtdb_species": "s__CAAEEV01 sp011038975", "ani": 78.5771, "matched_fragments": 202, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013185065.1", "gtdb_species": "s__CAAEEV01 sp013185065", "ani": 78.5747, "matched_fragments": 188, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910585565.1", "gtdb_species": "s__MGBC163016 sp910585565", "ani": 78.1961, "matched_fragments": 133, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910589135.1", "gtdb_species": "s__MGBC163016 sp910589135", "ani": 78.1262, "matched_fragments": 175, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339815.1", "gtdb_species": "s__Eggerthella sinensis", "ani": 77.7763, "matched_fragments": 164, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_015062635.1", "gtdb_species": "s__UMGS1519 sp015062635", "ani": 76.9735, "matched_fragments": 62, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__UMGS1519", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553775.1", "gtdb_species": "s__Slackia_A sp900553775", "ani": 76.908, "matched_fragments": 58, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.364, "cell_length": 0.056, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.1, "optimum_ph": 7.175, "genome_size": 2742939.573, "gc_content": 59.375, "coding_genes": 2246.12, "rRNA16S_genes": 2.375, "tRNA_genes": 47.375, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.1, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__MGBC163016", "s__MGBC163016 sp947650915" ], "_genome_taxon": [ "uncultured", "Eggerthellaceae", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__MGBC163016", "s__MGBC163016 sp947650915", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Eggerthellaceae", "MGBC163016", "MGBC163016", "sp947650915" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }