{ "type": "genome", "identifier": "GCA_947652135.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947652135.1", "bioproject": "PRJEB57839", "biosample": "SAMEA112228050", "wgs_master": "CANTCB000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "SRR13921777_bin.43_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/21", "asm_name": "SRR13921777_bin.43_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/652/135/GCA_947652135.1_SRR13921777_bin.43_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-21", "dateModified": "2022-12-21", "datePublished": "2022-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 41.04, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "995526", "Number of Sequences": "93", "Longest Sequences (bp)": "52440", "N50 (bp)": "13844", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "845", "Average Protein Length": "310.2", "Coding Ratio (%)": "79.0", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_008831045.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 79.9362, "matched_fragments": 145, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia caecimuris", "strain": "strain=B7", "accession": "GCA_000403355.2", "taxid": 671266, "species_taxid": 671266, "relation_to_type": "type", "validated": true, "ani": 79.894, "matched_fragments": 134, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 79.8769, "matched_fragments": 152, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia mucosicola", "strain": "strain=DSM 19490", "accession": "GCA_000422625.1", "taxid": 580026, "species_taxid": 580026, "relation_to_type": "type", "validated": true, "ani": 79.7868, "matched_fragments": 143, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia caecimuris", "strain": "strain=DSM 21839", "accession": "GCA_024623275.1", "taxid": 671266, "species_taxid": 671266, "relation_to_type": "type", "validated": true, "ani": 79.7282, "matched_fragments": 136, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia mucosicola", "strain": "strain=DSM 19490", "accession": "GCA_024623255.1", "taxid": 580026, "species_taxid": 580026, "relation_to_type": "type", "validated": true, "ani": 79.6913, "matched_fragments": 144, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens", "strain": "strain=DSM 19450", "accession": "GCA_000478885.1", "taxid": 2864143, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 79.6374, "matched_fragments": 133, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_003726015.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 79.5518, "matched_fragments": 128, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_024171685.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 79.5305, "matched_fragments": 127, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213T", "accession": "GCA_900199375.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 79.5057, "matched_fragments": 153, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213", "accession": "GCA_003788975.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 79.4946, "matched_fragments": 155, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.3319, "matched_fragments": 132, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 79.3052, "matched_fragments": 130, "total_fragments": 286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.04, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_910588095.1", "gtdb_species": "s__D16-63 sp910588095", "ani": 97.5265, "matched_fragments": 258, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__D16-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003612475.1", "gtdb_species": "s__D16-63 sp003612475", "ani": 86.2851, "matched_fragments": 181, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__D16-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910589695.1", "gtdb_species": "s__QWKK01 sp910589695", "ani": 80.9251, "matched_fragments": 158, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009911695.1", "gtdb_species": "s__QWKK01 sp009911695", "ani": 80.895, "matched_fragments": 151, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013185065.1", "gtdb_species": "s__CAAEEV01 sp013185065", "ani": 80.7203, "matched_fragments": 150, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011038975.1", "gtdb_species": "s__CAAEEV01 sp011038975", "ani": 80.4299, "matched_fragments": 156, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008831045.1", "gtdb_species": "s__Adlercreutzia muris", "ani": 79.9008, "matched_fragments": 146, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000403355.2", "gtdb_species": "s__Adlercreutzia caecimuris", "ani": 79.894, "matched_fragments": 134, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000478885.1", "gtdb_species": "s__Adlercreutzia equolifaciens", "ani": 79.6374, "matched_fragments": 133, "total_fragments": 286, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.79", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__D16-63", "s__D16-63 sp910588095" ], "_genome_taxon": [ "uncultured", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__D16-63", "s__D16-63 sp910588095", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Eggerthellaceae", "D16-63", "D16-63", "sp910588095" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }