{
    "type": "genome",
    "identifier": "GCA_947652555.1",
    "organism": "[Clostridium] innocuum",
    "title": "[Clostridium] innocuum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947652555.1",
        "bioproject": "PRJEB58022",
        "biosample": "SAMEA112250243",
        "wgs_master": "CANTDN000000000.1",
        "refseq_category": "na",
        "taxid": "1522",
        "species_taxid": "1522",
        "organism_name": "[Clostridium] innocuum",
        "infraspecific_name": "",
        "isolate": "SRR18243792_bin.6_metawrap_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/21",
        "asm_name": "SRR18243792_bin.6_metawrap_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/652/555/GCA_947652555.1_SRR18243792_bin.6_metawrap_v1.3_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-21",
    "dateModified": "2022-12-21",
    "datePublished": "2022-12-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Clostridium] innocuum"
        ],
        "sample_taxid": [
            "1522"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.174 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4117946",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "198524",
        "N50 (bp)": "93862",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "4051",
        "Average Protein Length": "288.7",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "[Clostridium] innocuum",
                "strain": "strain=ATCC 14501",
                "accession": "GCA_018458805.1",
                "taxid": 1522,
                "species_taxid": 1522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5843,
                "matched_fragments": 1149,
                "total_fragments": 1330,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] innocuum",
                "strain": "strain=ATCC 14501",
                "accession": "GCA_012317185.1",
                "taxid": 1522,
                "species_taxid": 1522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5446,
                "matched_fragments": 1163,
                "total_fragments": 1330,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Amedibacillus dolichus",
                "strain": "strain=DSM 3991",
                "accession": "GCA_000154285.1",
                "taxid": 31971,
                "species_taxid": 31971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0117,
                "matched_fragments": 108,
                "total_fragments": 1330,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_004341945.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9863,
                "matched_fragments": 154,
                "total_fragments": 1330,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_024622185.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9362,
                "matched_fragments": 153,
                "total_fragments": 1330,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_012317185.1",
                "gtdb_species": "s__Clostridium_AQ innocuum",
                "ani": 97.5446,
                "matched_fragments": 1163,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium_AQ",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 50,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003481775.1",
                "gtdb_species": "s__Clostridium_AQ sp003481775",
                "ani": 90.1672,
                "matched_fragments": 1066,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium_AQ",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017161075.1",
                "gtdb_species": "s__Clostridium_AQ sp000165065",
                "ani": 83.1855,
                "matched_fragments": 832,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium_AQ",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_910576345.1",
                "gtdb_species": "s__C-19 sp910576345",
                "ani": 79.5183,
                "matched_fragments": 59,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__C-19",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "99.11",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014337235.1",
                "gtdb_species": "s__NSJ-61 sp003433845",
                "ani": 78.1528,
                "matched_fragments": 131,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__NSJ-61",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000154285.1",
                "gtdb_species": "s__Amedibacillus dolichus",
                "ani": 78.0117,
                "matched_fragments": 108,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Amedibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_004341945.1",
                "gtdb_species": "s__Longicatena caecimuris",
                "ani": 77.9805,
                "matched_fragments": 153,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Longicatena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.14",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCA_900552125.1",
                "gtdb_species": "s__Clostridium_AQ sp900552125",
                "ani": 77.8919,
                "matched_fragments": 180,
                "total_fragments": 1330,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium_AQ",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4553901.167,
        "gc_content": 43.37,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Clostridium_AQ",
        "s__Clostridium_AQ innocuum"
    ],
    "_genome_taxon": [
        "[Clostridium]",
        "innocuum",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Clostridium_AQ",
        "s__Clostridium_AQ innocuum",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Erysipelotrichaceae",
        "Clostridium",
        "AQ",
        "Clostridium",
        "AQ",
        "innocuum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}