{ "type": "genome", "identifier": "GCA_948356055.1", "organism": "uncultured Mycoplasmatota bacterium", "title": "uncultured Mycoplasmatota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_948356055.1", "bioproject": "PRJEB55801", "biosample": "SAMEA112223388", "wgs_master": "CAOJCD000000000.1", "refseq_category": "na", "taxid": "658143", "species_taxid": "658143", "organism_name": "uncultured Mycoplasmatota bacterium", "infraspecific_name": "", "isolate": "SRR19759454_bin.59_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/29", "asm_name": "SRR19759454_bin.59_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/948/356/055/GCA_948356055.1_SRR19759454_bin.59_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-29", "dateModified": "2023-01-29", "datePublished": "2023-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mycoplasmatota bacterium" ], "sample_taxid": [ "658143" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.304 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1094937", "Number of Sequences": "59", "Longest Sequences (bp)": "120657", "N50 (bp)": "24466", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.2", "Number of CDSs": "1008", "Average Protein Length": "309.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "1", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_910586195.1", "gtdb_species": "s__MGBC119817 sp910586195", "ani": 99.8989, "matched_fragments": 310, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__MGBC119817", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_910583685.1", "gtdb_species": "s__MGBC119817 sp910583685", "ani": 79.3347, "matched_fragments": 122, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__MGBC119817", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585335.1", "gtdb_species": "s__MGBC119817 sp910585335", "ani": 79.1965, "matched_fragments": 134, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__MGBC119817", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910586865.1", "gtdb_species": "s__UMGS995 sp910586865", "ani": 78.3445, "matched_fragments": 58, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS995", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910586635.1", "gtdb_species": "s__UMGS995 sp910586635", "ani": 77.915, "matched_fragments": 53, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS995", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018712565.1", "gtdb_species": "s__Faecimonas gallistercoris", "ani": 77.6763, "matched_fragments": 60, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900547465.1", "gtdb_species": "s__UMGS995 sp900547465", "ani": 77.4465, "matched_fragments": 55, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS995", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910589335.1", "gtdb_species": "s__UBA3789 sp910589335", "ani": 77.2043, "matched_fragments": 56, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA3789", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017622175.1", "gtdb_species": "s__CAG-877 sp017622175", "ani": 77.0443, "matched_fragments": 50, "total_fragments": 339, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__MGBC119817", "s__MGBC119817 sp910586195" ], "_genome_taxon": [ "uncultured", "Mycoplasmatota", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__MGBC119817", "s__MGBC119817 sp910586195", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "MGBC119817", "MGBC119817", "sp910586195" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }