{ "type": "genome", "identifier": "GCA_948441075.1", "organism": "uncultured Coriobacteriaceae bacterium", "title": "uncultured Coriobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_948441075.1", "bioproject": "PRJEB58054", "biosample": "SAMEA112353565", "wgs_master": "CAOJPH000000000.1", "refseq_category": "na", "taxid": "331632", "species_taxid": "331632", "organism_name": "uncultured Coriobacteriaceae bacterium", "infraspecific_name": "", "isolate": "SRR17622768_bin.89_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/03", "asm_name": "SRR17622768_bin.89_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/948/441/075/GCA_948441075.1_SRR17622768_bin.89_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-03", "dateModified": "2023-02-03", "datePublished": "2023-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Coriobacteriaceae bacterium" ], "sample_taxid": [ "331632" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "0.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1854889", "Number of Sequences": "75", "Longest Sequences (bp)": "103929", "N50 (bp)": "48159", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "1632", "Average Protein Length": "331.4", "Coding Ratio (%)": "87.5", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 77.9792, "matched_fragments": 77, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 77.518, "matched_fragments": 94, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.4247, "matched_fragments": 93, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=NCTC11029", "accession": "GCA_900637575.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.4245, "matched_fragments": 80, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=DSM 20476", "accession": "GCA_000023885.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.4238, "matched_fragments": 81, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.3712, "matched_fragments": 95, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 77.3523, "matched_fragments": 92, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_000024265.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.3015, "matched_fragments": 98, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella guodeyinii", "strain": "strain=HF-1101", "accession": "GCA_009834925.2", "taxid": 2690837, "species_taxid": 2690837, "relation_to_type": "type", "validated": true, "ani": 77.2958, "matched_fragments": 123, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 77.2462, "matched_fragments": 94, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella tanakaei", "strain": "strain=YIT 12063", "accession": "GCA_000225705.1", "taxid": 626935, "species_taxid": 626935, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2458, "matched_fragments": 55, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia equolifaciens", "strain": "strain=DSM 24851", "accession": "GCA_003725995.1", "taxid": 498718, "species_taxid": 498718, "relation_to_type": "type", "validated": true, "ani": 77.1508, "matched_fragments": 71, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 77.1044, "matched_fragments": 73, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_008831045.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 77.0943, "matched_fragments": 78, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_024171685.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.0924, "matched_fragments": 78, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_024623245.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 77.0626, "matched_fragments": 79, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens", "strain": "strain=DSM 19450", "accession": "GCA_000478885.1", "taxid": 2864143, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.0393, "matched_fragments": 84, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_003726015.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.029, "matched_fragments": 76, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_014192995.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 76.9238, "matched_fragments": 56, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia exigua", "strain": "strain=NCTC12994", "accession": "GCA_900450505.1", "taxid": 84109, "species_taxid": 84109, "relation_to_type": "type", "validated": true, "ani": 76.7889, "matched_fragments": 84, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 76.7354, "matched_fragments": 103, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia exigua", "strain": "strain=ATCC 700122", "accession": "GCA_000162875.1", "taxid": 84109, "species_taxid": 84109, "relation_to_type": "type", "validated": true, "ani": 76.718, "matched_fragments": 88, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia hattorii", "strain": "strain=8CFCBH1", "accession": "GCA_011405655.1", "taxid": 2707299, "species_taxid": 2707299, "relation_to_type": "type", "validated": true, "ani": 76.6865, "matched_fragments": 86, "total_fragments": 585, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900758075.1", "gtdb_species": "s__CACZQA01 sp900758075", "ani": 97.8971, "matched_fragments": 314, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__CACZQA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_902783175.1", "gtdb_species": "s__CACZQA01 sp902783175", "ani": 94.4502, "matched_fragments": 305, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__CACZQA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.71", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003149935.1", "gtdb_species": "s__QAMH01 sp003149935", "ani": 78.946, "matched_fragments": 153, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__QAMH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900544245.1", "gtdb_species": "s__QAMH01 sp900544245", "ani": 78.8833, "matched_fragments": 166, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__QAMH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900556425.1", "gtdb_species": "s__QAMH01 sp900556425", "ani": 78.2535, "matched_fragments": 87, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__QAMH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900756605.1", "gtdb_species": "s__QAMH01 sp900756605", "ani": 78.1996, "matched_fragments": 103, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__QAMH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004553405.1", "gtdb_species": "s__W2P13-069 sp004553405", "ani": 77.6772, "matched_fragments": 95, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__W2P13-069", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902783925.1", "gtdb_species": "s__QAMH01 sp902783925", "ani": 77.5937, "matched_fragments": 88, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__QAMH01;g__QAMH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013185065.1", "gtdb_species": "s__CAAEEV01 sp013185065", "ani": 77.581, "matched_fragments": 119, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018368455.1", "gtdb_species": "s__JAGZEG01 sp018368455", "ani": 77.378, "matched_fragments": 91, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__UMGS124;g__JAGZEG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902780325.1", "gtdb_species": "s__Parafannyhessea sp902787335", "ani": 77.2321, "matched_fragments": 83, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parafannyhessea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.75", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_910589695.1", "gtdb_species": "s__QWKK01 sp910589695", "ani": 77.21, "matched_fragments": 89, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003725995.1", "gtdb_species": "s__Slackia_A equolifaciens", "ani": 77.1904, "matched_fragments": 70, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902777325.1", "gtdb_species": "s__UBA1367 sp902777325", "ani": 77.1287, "matched_fragments": 76, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA1367", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016899935.1", "gtdb_species": "s__Thermophilibacter uli_B", "ani": 76.904, "matched_fragments": 98, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910589165.1", "gtdb_species": "s__Adlercreutzia sp910589165", "ani": 76.8898, "matched_fragments": 85, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900549525.1", "gtdb_species": "s__Parolsenella sp900549525", "ani": 76.6857, "matched_fragments": 63, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parolsenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.435, "cell_length": 0.089, "doubling_h": null, "growth_tmp": 36.125, "optimum_tmp": 36.142, "optimum_ph": 7.233, "genome_size": 2293139.966, "gc_content": 61.955, "coding_genes": 1736.778, "rRNA16S_genes": 2.0, "tRNA_genes": 50.333, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__QAMH01", "g__CACZQA01", "s__CACZQA01 sp900758075" ], "_genome_taxon": [ "uncultured", "Coriobacteriaceae", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__QAMH01", "g__CACZQA01", "s__CACZQA01 sp900758075", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "QAMH01", "CACZQA01", "CACZQA01", "sp900758075" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }